Results 41 - 60 of 316 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29600 | 3' | -56.5 | NC_006151.1 | + | 87579 | 0.72 | 0.565551 |
Target: 5'- cGGACGUcuccgccggCACcAUCGACGC-CAGCUCg -3' miRNA: 3'- aCCUGCG---------GUGcUAGUUGCGcGUCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 77106 | 0.72 | 0.545375 |
Target: 5'- cGGGCGCgGCGggC-GCGCGCccacaaaggccgAGCUCa -3' miRNA: 3'- aCCUGCGgUGCuaGuUGCGCG------------UCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 75056 | 0.72 | 0.535374 |
Target: 5'- cGGGCGCgACGAagaagUCAAaggccggGUGCAGCUCc -3' miRNA: 3'- aCCUGCGgUGCU-----AGUUg------CGCGUCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 84411 | 0.72 | 0.515571 |
Target: 5'- gUGGGCGCgGUGAUaaggCGGCGCGCGGCg- -3' miRNA: 3'- -ACCUGCGgUGCUA----GUUGCGCGUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 2017 | 0.72 | 0.525437 |
Target: 5'- gGGGCGCCcCGcUCAGCGgaGCAGCa- -3' miRNA: 3'- aCCUGCGGuGCuAGUUGCg-CGUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 138141 | 0.72 | 0.545375 |
Target: 5'- gUGGACGCgGagGAcCGGCGCGC-GCUCg -3' miRNA: 3'- -ACCUGCGgUg-CUaGUUGCGCGuCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 39771 | 0.72 | 0.535374 |
Target: 5'- cGGGCGCCGCcuucGggCAcCGCGCGGC-Ca -3' miRNA: 3'- aCCUGCGGUG----CuaGUuGCGCGUCGaG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 78217 | 0.72 | 0.525437 |
Target: 5'- cGGGCuCCACGucgcUCAcggGCGCGCAGCg- -3' miRNA: 3'- aCCUGcGGUGCu---AGU---UGCGCGUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 117277 | 0.72 | 0.555436 |
Target: 5'- cGGcCGCCGcCGA-CAGCGCGCGcgcgagcuGCUCg -3' miRNA: 3'- aCCuGCGGU-GCUaGUUGCGCGU--------CGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 101964 | 0.72 | 0.555436 |
Target: 5'- aGcACGCaCACGGUCGGCGgGCGGCcgUCg -3' miRNA: 3'- aCcUGCG-GUGCUAGUUGCgCGUCG--AG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 19892 | 0.72 | 0.534377 |
Target: 5'- aGGgccagcaGCGCCAgGAgcugcgCGGCGCGCAGCa- -3' miRNA: 3'- aCC-------UGCGGUgCUa-----GUUGCGCGUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 96752 | 0.72 | 0.545375 |
Target: 5'- cGGAgGCCAUGG-CGGCGUGU-GCUCg -3' miRNA: 3'- aCCUgCGGUGCUaGUUGCGCGuCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 69578 | 0.72 | 0.525437 |
Target: 5'- gGGugccGCGCCGCGAcgagcUCGGcCGCGCGGCg- -3' miRNA: 3'- aCC----UGCGGUGCU-----AGUU-GCGCGUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 71011 | 0.72 | 0.545375 |
Target: 5'- gUGGGCGCCAUGcgC--CGCG-AGCUCg -3' miRNA: 3'- -ACCUGCGGUGCuaGuuGCGCgUCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 138711 | 0.72 | 0.555436 |
Target: 5'- -cGGCGCUGCGcgCcGCGCGCGGgUCg -3' miRNA: 3'- acCUGCGGUGCuaGuUGCGCGUCgAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 104030 | 0.72 | 0.535374 |
Target: 5'- aGGugGagCGCGcgCAGCGC-CAGCUCu -3' miRNA: 3'- aCCugCg-GUGCuaGUUGCGcGUCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 118099 | 0.72 | 0.512626 |
Target: 5'- aGGcgcuGCGCCGCGAccugcuggcgcugcUCGugGCGCGCAGCg- -3' miRNA: 3'- aCC----UGCGGUGCU--------------AGU--UGCGCGUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 102950 | 0.72 | 0.524447 |
Target: 5'- cUGGACGCggcgcccgccgccCACGA-CGGCGCGCuGCUg -3' miRNA: 3'- -ACCUGCG-------------GUGCUaGUUGCGCGuCGAg -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 57469 | 0.71 | 0.573677 |
Target: 5'- aGGugccGCGCCGCGGcggccucgcaggCGACGCGCAcgcGCUCg -3' miRNA: 3'- aCC----UGCGGUGCUa-----------GUUGCGCGU---CGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 130054 | 0.71 | 0.593078 |
Target: 5'- gUGGugcauCGCgagCACGGUCAGCGUgaacaugggcgcgaGCAGCUCg -3' miRNA: 3'- -ACCu----GCG---GUGCUAGUUGCG--------------CGUCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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