miRNA display CGI


Results 61 - 80 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 71092 0.72 0.196393
Target:  5'- gGCGCCGcgGGCgCGG--GCGCCGUGCg -3'
miRNA:   3'- gCGCGGUa-CCG-GCCgaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 58673 0.72 0.196393
Target:  5'- gGcCGCCAUGaccgcGCCGuGC-GCGCCGCGCc -3'
miRNA:   3'- gC-GCGGUAC-----CGGC-CGaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 20174 0.72 0.196393
Target:  5'- cCGCGCCcgggucgcGGCCGGUagaUGCGauuCCGCGCg -3'
miRNA:   3'- -GCGCGGua------CCGGCCG---ACGC---GGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 130345 0.72 0.196393
Target:  5'- gCGCGCCGcGGCgucgUGGUUGacgGCCGCGCg -3'
miRNA:   3'- -GCGCGGUaCCG----GCCGACg--CGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 85440 0.72 0.196393
Target:  5'- cCGCGCCGcGGCCGccuucCUGgGCCGCGg- -3'
miRNA:   3'- -GCGCGGUaCCGGCc----GACgCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 78423 0.71 0.199194
Target:  5'- aGCGCCGUGGCCcacgccgucaaccGC-GUGCUGCGCg -3'
miRNA:   3'- gCGCGGUACCGGc------------CGaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 119966 0.71 0.199194
Target:  5'- gCGCGCUGUGcCCGGCgacgagcuuccugGCGCgGCGCa -3'
miRNA:   3'- -GCGCGGUACcGGCCGa------------CGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 41451 0.71 0.201554
Target:  5'- cCGCuGCCAccgauUGGCCGGCgggacgaugacgacgGCGaCCGCGUg -3'
miRNA:   3'- -GCG-CGGU-----ACCGGCCGa--------------CGC-GGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 57474 0.71 0.205864
Target:  5'- cCGCGCCGcggcGGCCucgcaGGCgacGCGCaCGCGCUc -3'
miRNA:   3'- -GCGCGGUa---CCGG-----CCGa--CGCG-GCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 105699 0.71 0.205864
Target:  5'- cCGaCGCCGgcgcGGCCGcGCgccucgacgGCGCCGUGCg -3'
miRNA:   3'- -GC-GCGGUa---CCGGC-CGa--------CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 95421 0.71 0.205864
Target:  5'- cCGUGCagagguuggaCGUGGCgagGGCgGCGCCGCGCg -3'
miRNA:   3'- -GCGCG----------GUACCGg--CCGaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 89545 0.71 0.205864
Target:  5'- aGCGCCGaGGCCGGUgGagGCCGCGa- -3'
miRNA:   3'- gCGCGGUaCCGGCCGaCg-CGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 106237 0.71 0.205864
Target:  5'- gGcCGCgGUGGCCGGCga-GCCGaCGCa -3'
miRNA:   3'- gC-GCGgUACCGGCCGacgCGGC-GCGa -5'
29602 3' -65.7 NC_006151.1 + 104585 0.71 0.210745
Target:  5'- aCGUGCUgcaGGCCGGCgGCaGCCGCGg- -3'
miRNA:   3'- -GCGCGGua-CCGGCCGaCG-CGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 133332 0.71 0.210745
Target:  5'- gCGCGCCGggcGGCCGGUUcCGCgGCGg- -3'
miRNA:   3'- -GCGCGGUa--CCGGCCGAcGCGgCGCga -5'
29602 3' -65.7 NC_006151.1 + 38381 0.71 0.215726
Target:  5'- aGCGCCGgcGCCGGCgGCGgCGgGCg -3'
miRNA:   3'- gCGCGGUacCGGCCGaCGCgGCgCGa -5'
29602 3' -65.7 NC_006151.1 + 105362 0.71 0.215726
Target:  5'- gGCGaCCAUGGa-GGUgcugGCGCUGCGCa -3'
miRNA:   3'- gCGC-GGUACCggCCGa---CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 66563 0.71 0.220808
Target:  5'- gCGcCGCCGUGGacCCGGCgcuCGCgCGCGCg -3'
miRNA:   3'- -GC-GCGGUACC--GGCCGac-GCG-GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 73101 0.71 0.220808
Target:  5'- -uCGCCGUGcaccucGCCGGCggcGCGcCCGCGCg -3'
miRNA:   3'- gcGCGGUAC------CGGCCGa--CGC-GGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 127435 0.71 0.225468
Target:  5'- gGCGCuCGUGcgcgagaGCCGGCgGCGCacgaaGCGCUg -3'
miRNA:   3'- gCGCG-GUAC-------CGGCCGaCGCGg----CGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.