Results 21 - 40 of 352 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29602 | 3' | -65.7 | NC_006151.1 | + | 106496 | 0.75 | 0.106857 |
Target: 5'- aCGgGCCAgcGGCUGGCgcGCGCCGUGCc -3' miRNA: 3'- -GCgCGGUa-CCGGCCGa-CGCGGCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 113415 | 0.74 | 0.140228 |
Target: 5'- gCGCGCgCAcUGGCUGGCgcUGCGCCGCu-- -3' miRNA: 3'- -GCGCG-GU-ACCGGCCG--ACGCGGCGcga -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 135365 | 0.74 | 0.127111 |
Target: 5'- cCGCGCguUGGCCGcgUGCGCCGCGa- -3' miRNA: 3'- -GCGCGguACCGGCcgACGCGGCGCga -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 64947 | 0.74 | 0.133521 |
Target: 5'- aGCGCC-UGGCCGcGCUGCGg-GCGCa -3' miRNA: 3'- gCGCGGuACCGGC-CGACGCggCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 136985 | 0.74 | 0.143696 |
Target: 5'- cCGCGCCG-GG-CGGCggGCGCgCGCGCa -3' miRNA: 3'- -GCGCGGUaCCgGCCGa-CGCG-GCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 39637 | 0.74 | 0.144047 |
Target: 5'- cCGCGCCG-GGCCccggaccccggucccGCUGcCGCCGCGCg -3' miRNA: 3'- -GCGCGGUaCCGGc--------------CGAC-GCGGCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 40035 | 0.74 | 0.143696 |
Target: 5'- cCGCGCCGccGCCGGggGCGCCGUGg- -3' miRNA: 3'- -GCGCGGUacCGGCCgaCGCGGCGCga -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 85157 | 0.74 | 0.133521 |
Target: 5'- uGCGgCAgggGGCCGGCgccgcggGCGCCGcCGCc -3' miRNA: 3'- gCGCgGUa--CCGGCCGa------CGCGGC-GCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 65812 | 0.73 | 0.1542 |
Target: 5'- aCGUGCCGcgguggaUGGgCGGCcGCGCCaGCGCg -3' miRNA: 3'- -GCGCGGU-------ACCgGCCGaCGCGG-CGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 129114 | 0.73 | 0.170238 |
Target: 5'- aGCGCCAgGGCCgaGGC-GCGCUGgGCg -3' miRNA: 3'- gCGCGGUaCCGG--CCGaCGCGGCgCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 77973 | 0.73 | 0.147242 |
Target: 5'- cCGCGCCGguacGCCGaGCgcGCGCUGCGCg -3' miRNA: 3'- -GCGCGGUac--CGGC-CGa-CGCGGCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 2906 | 0.73 | 0.158363 |
Target: 5'- aGCaCgAUGaGCCGGCgccGCGCCGCGCc -3' miRNA: 3'- gCGcGgUAC-CGGCCGa--CGCGGCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 138699 | 0.73 | 0.147242 |
Target: 5'- aCGCGCUGaGcCCGGCgcugcGCGCCGCGCg -3' miRNA: 3'- -GCGCGGUaCcGGCCGa----CGCGGCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 130295 | 0.73 | 0.158363 |
Target: 5'- gCGCGCCGgccgacGGCgCGGagcgcgcGCGCCGCGCg -3' miRNA: 3'- -GCGCGGUa-----CCG-GCCga-----CGCGGCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 31757 | 0.73 | 0.154574 |
Target: 5'- aCGCGCCugcggcGGCgGGCgcGCGCCGgGCg -3' miRNA: 3'- -GCGCGGua----CCGgCCGa-CGCGGCgCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 73315 | 0.73 | 0.147242 |
Target: 5'- cCGCGUccagCAUGGgCGGg-GCGCCGCGCg -3' miRNA: 3'- -GCGCG----GUACCgGCCgaCGCGGCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 135811 | 0.73 | 0.154574 |
Target: 5'- gCGCGCCGaGGCCGaGCUuuuagcGCGCCGCcccgGCg -3' miRNA: 3'- -GCGCGGUaCCGGC-CGA------CGCGGCG----CGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 64621 | 0.73 | 0.170238 |
Target: 5'- cCGCGCCGccGGCCGcGggGCGCgGCGCc -3' miRNA: 3'- -GCGCGGUa-CCGGC-CgaCGCGgCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 39317 | 0.73 | 0.17188 |
Target: 5'- gGCGCCGUGGaguaccucugcucgCGGCUcgGCGCgGCGCg -3' miRNA: 3'- gCGCGGUACCg-------------GCCGA--CGCGgCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 136808 | 0.73 | 0.154574 |
Target: 5'- cCGCGCuCGcGGCCGaC-GCGCCGCGCg -3' miRNA: 3'- -GCGCG-GUaCCGGCcGaCGCGGCGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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