Results 41 - 60 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29602 | 5' | -56.9 | NC_006151.1 | + | 64239 | 0.69 | 0.686859 |
Target: 5'- aGGGcCGCGACgGCGGCgcGGGCCAcGCUcUCg -3' miRNA: 3'- -UCUaGUGCUG-CGCCG--CCUGGU-CGA-AG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 71972 | 0.69 | 0.696941 |
Target: 5'- -uGUCGCGGUGCGGCGgGGgCAGCUg- -3' miRNA: 3'- ucUAGUGCUGCGCCGC-CUgGUCGAag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 137128 | 0.69 | 0.686859 |
Target: 5'- cGcgCgACGGCGCGGCGcGACgCGGCg-- -3' miRNA: 3'- uCuaG-UGCUGCGCCGC-CUG-GUCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 79786 | 0.69 | 0.676731 |
Target: 5'- cGGAUCGCGgccucgGCGCGGCacACCGGCa-- -3' miRNA: 3'- -UCUAGUGC------UGCGCCGccUGGUCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 69831 | 0.69 | 0.70697 |
Target: 5'- ---cCACGuuguaGCGCGuGCGGGCCGGCa-- -3' miRNA: 3'- ucuaGUGC-----UGCGC-CGCCUGGUCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 80264 | 0.69 | 0.716935 |
Target: 5'- gAGAggGCGACGaggguaCGGCGGACacauccgcggaGGCUUCg -3' miRNA: 3'- -UCUagUGCUGC------GCCGCCUGg----------UCGAAG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 123213 | 0.69 | 0.716935 |
Target: 5'- ---gUACGugGCGGUGGccGCCGGgUUCc -3' miRNA: 3'- ucuaGUGCugCGCCGCC--UGGUCgAAG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 10699 | 0.69 | 0.726827 |
Target: 5'- uGAUCACGuuCGCGcaccGCGGcGCCAGCa-- -3' miRNA: 3'- uCUAGUGCu-GCGC----CGCC-UGGUCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 104842 | 0.69 | 0.726827 |
Target: 5'- ---cCGCGGCGgaGGCGGACCAGg--- -3' miRNA: 3'- ucuaGUGCUGCg-CCGCCUGGUCgaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 104130 | 0.68 | 0.755979 |
Target: 5'- ---gCGCGACGUGGCGGccgACCgcGGCUa- -3' miRNA: 3'- ucuaGUGCUGCGCCGCC---UGG--UCGAag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 68273 | 0.68 | 0.755979 |
Target: 5'- cGGUCGCGGCGCcgggcgccacGGCGG-CCAgGCg-- -3' miRNA: 3'- uCUAGUGCUGCG----------CCGCCuGGU-CGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 101383 | 0.68 | 0.762649 |
Target: 5'- cAGAUCACGGCGCgcgccuucuucgacGGCcucuGGGCgCAGCg-- -3' miRNA: 3'- -UCUAGUGCUGCG--------------CCG----CCUG-GUCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 133626 | 0.68 | 0.764545 |
Target: 5'- gGGGUCGCGGCggccgggGCGGUGGuCCGGgUg- -3' miRNA: 3'- -UCUAGUGCUG-------CGCCGCCuGGUCgAag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 29585 | 0.68 | 0.764545 |
Target: 5'- cGGAUCGCGGCggcugcggccgcgGCGGCGGG--GGCUg- -3' miRNA: 3'- -UCUAGUGCUG-------------CGCCGCCUggUCGAag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 68465 | 0.68 | 0.765491 |
Target: 5'- gGGGUcCACcaGCGCGGCGGGCCA-CUcCa -3' miRNA: 3'- -UCUA-GUGc-UGCGCCGCCUGGUcGAaG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 102400 | 0.68 | 0.774884 |
Target: 5'- uGGUCGCGGCGCGcgucGCGcGGCCcGCg-- -3' miRNA: 3'- uCUAGUGCUGCGC----CGC-CUGGuCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 104894 | 0.68 | 0.774884 |
Target: 5'- ---gCGCGAgGUGGUGGACgCGGCggCg -3' miRNA: 3'- ucuaGUGCUgCGCCGCCUG-GUCGaaG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 130372 | 0.68 | 0.774884 |
Target: 5'- cGcgCGCGcCGCGGCGuccagcgcgaaGGCCAGCgccUCg -3' miRNA: 3'- uCuaGUGCuGCGCCGC-----------CUGGUCGa--AG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 75994 | 0.68 | 0.774884 |
Target: 5'- -cGUCGCGcACGCGGCGcuUCAGCUcCg -3' miRNA: 3'- ucUAGUGC-UGCGCCGCcuGGUCGAaG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 18683 | 0.68 | 0.784149 |
Target: 5'- cGGGUucCACGggcGCGCgGGCGGcGCCGGCgUCg -3' miRNA: 3'- -UCUA--GUGC---UGCG-CCGCC-UGGUCGaAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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