Results 41 - 60 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29602 | 5' | -56.9 | NC_006151.1 | + | 120718 | 0.66 | 0.872356 |
Target: 5'- gGGAUCACGAUGCagucgaagcgcccGCGGGacCCGGCcgcgUCa -3' miRNA: 3'- -UCUAGUGCUGCGc------------CGCCU--GGUCGa---AG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 75127 | 0.66 | 0.87526 |
Target: 5'- uGGUCgGCGGCcgGCGGCGcGGcCCAGCg-- -3' miRNA: 3'- uCUAG-UGCUG--CGCCGC-CU-GGUCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 95426 | 0.66 | 0.87526 |
Target: 5'- cAGAggUugGACGUGGCGaGGgCGGCg-- -3' miRNA: 3'- -UCUa-GugCUGCGCCGC-CUgGUCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 96809 | 0.66 | 0.87526 |
Target: 5'- gGGcgCGCGGgcuuuuaGCGGCGGGCCcGCc-- -3' miRNA: 3'- -UCuaGUGCUg------CGCCGCCUGGuCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 4400 | 0.66 | 0.87526 |
Target: 5'- gGGGUcCGCGGCGCGGCccGGGuaGGCcaugUCg -3' miRNA: 3'- -UCUA-GUGCUGCGCCG--CCUggUCGa---AG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 107173 | 0.66 | 0.858866 |
Target: 5'- gAGAUCcccuuccuggaGACGaCGGaGGACCAGCUg- -3' miRNA: 3'- -UCUAGug---------CUGC-GCCgCCUGGUCGAag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 36504 | 0.66 | 0.855777 |
Target: 5'- cGGUCggugagcccgggccgGCGGCGCGGCcucGGACCccGGCg-- -3' miRNA: 3'- uCUAG---------------UGCUGCGCCG---CCUGG--UCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 75454 | 0.67 | 0.82826 |
Target: 5'- uGGcgCGCGuaGCGguCGGCGG-CCGGCUUg -3' miRNA: 3'- -UCuaGUGC--UGC--GCCGCCuGGUCGAAg -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 98210 | 0.67 | 0.82826 |
Target: 5'- gGGGUCGaguGCGCGGCGGcGCCcGCg-- -3' miRNA: 3'- -UCUAGUgc-UGCGCCGCC-UGGuCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 54063 | 0.66 | 0.83658 |
Target: 5'- uGGcgUugGugGCGcGCGGACCcucuGCggCg -3' miRNA: 3'- -UCuaGugCugCGC-CGCCUGGu---CGaaG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 57512 | 0.66 | 0.83658 |
Target: 5'- cGGcCGCGGCgGCGGCGGccgccuCCGGCg-- -3' miRNA: 3'- uCUaGUGCUG-CGCCGCCu-----GGUCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 85964 | 0.66 | 0.83658 |
Target: 5'- ---gCGCaACGCGGCGGACaAGCgccUCg -3' miRNA: 3'- ucuaGUGcUGCGCCGCCUGgUCGa--AG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 96213 | 0.66 | 0.83658 |
Target: 5'- -cGUCGcCGugGCGGCGGcCgCGGCg-- -3' miRNA: 3'- ucUAGU-GCugCGCCGCCuG-GUCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 128616 | 0.66 | 0.83658 |
Target: 5'- ---cCGCGGCGUgcgccccagguGGCGGACCAcGCgcgcgUCg -3' miRNA: 3'- ucuaGUGCUGCG-----------CCGCCUGGU-CGa----AG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 5333 | 0.66 | 0.844714 |
Target: 5'- ---cCGCGGCcGCGGCGGAgggcgcccucuCCGGCg-- -3' miRNA: 3'- ucuaGUGCUG-CGCCGCCU-----------GGUCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 104263 | 0.66 | 0.844714 |
Target: 5'- gAGAaCGcCGGCGCGGCGG-CgGGCc-- -3' miRNA: 3'- -UCUaGU-GCUGCGCCGCCuGgUCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 131768 | 0.66 | 0.844714 |
Target: 5'- cGGUCGCGAcCGCGGCcgcGGGCgCcGCcgUCg -3' miRNA: 3'- uCUAGUGCU-GCGCCG---CCUG-GuCGa-AG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 90736 | 0.66 | 0.851871 |
Target: 5'- cGGUgGCGGCggcgcccucggggGCGGCGGGCaCGGUggCg -3' miRNA: 3'- uCUAgUGCUG-------------CGCCGCCUG-GUCGaaG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 137728 | 0.66 | 0.852656 |
Target: 5'- -cGUCGcCGuACGCGGUGG-CCGGCg-- -3' miRNA: 3'- ucUAGU-GC-UGCGCCGCCuGGUCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 24723 | 0.66 | 0.852656 |
Target: 5'- cAGAUCGCaccGAaagUGCGGCaGGACCAGgCacgUCg -3' miRNA: 3'- -UCUAGUG---CU---GCGCCG-CCUGGUC-Ga--AG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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