miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29603 3' -59.4 NC_006151.1 + 24302 0.66 0.766307
Target:  5'- -aCUCCucGgGGUGCACC-CCgagGGCg -3'
miRNA:   3'- agGAGGcuCgCCAUGUGGaGGa--CCGa -5'
29603 3' -59.4 NC_006151.1 + 72754 0.66 0.747503
Target:  5'- gCCgagUCGcuggcgcacagcGGCgGGUACGCCUCCUGGa- -3'
miRNA:   3'- aGGa--GGC------------UCG-CCAUGUGGAGGACCga -5'
29603 3' -59.4 NC_006151.1 + 121332 0.66 0.747503
Target:  5'- gCCgCCGAGCuGGUGCGCgaCCUcgagGGCc -3'
miRNA:   3'- aGGaGGCUCG-CCAUGUGgaGGA----CCGa -5'
29603 3' -59.4 NC_006151.1 + 109289 0.66 0.737949
Target:  5'- cCCUCCGAgaucgaGCGGccCGCCgCCUcGGCg -3'
miRNA:   3'- aGGAGGCU------CGCCauGUGGaGGA-CCGa -5'
29603 3' -59.4 NC_006151.1 + 15027 0.67 0.708791
Target:  5'- aCC-CCGAGgaGGUGCGCgUCCacGGCg -3'
miRNA:   3'- aGGaGGCUCg-CCAUGUGgAGGa-CCGa -5'
29603 3' -59.4 NC_006151.1 + 66993 0.67 0.708791
Target:  5'- aUCCUCaugcacGCGGUGUACUUUCUGGCc -3'
miRNA:   3'- -AGGAGgcu---CGCCAUGUGGAGGACCGa -5'
29603 3' -59.4 NC_006151.1 + 57652 0.67 0.707808
Target:  5'- gCCagCgCGAugacgcuGUGGUACGCCUCCgGGCa -3'
miRNA:   3'- aGGa-G-GCU-------CGCCAUGUGGAGGaCCGa -5'
29603 3' -59.4 NC_006151.1 + 139598 0.67 0.679066
Target:  5'- cCCcCCGAGCGGcgGC-CCgUCCgGGCg -3'
miRNA:   3'- aGGaGGCUCGCCa-UGuGG-AGGaCCGa -5'
29603 3' -59.4 NC_006151.1 + 92463 0.67 0.679066
Target:  5'- gUCCUCgCGAGCcugggGGUGgACUacucggaguUCCUGGCc -3'
miRNA:   3'- -AGGAG-GCUCG-----CCAUgUGG---------AGGACCGa -5'
29603 3' -59.4 NC_006151.1 + 98372 0.67 0.679066
Target:  5'- -gCUCUGGGCGcGcGCGCUgcgCCUGGCc -3'
miRNA:   3'- agGAGGCUCGC-CaUGUGGa--GGACCGa -5'
29603 3' -59.4 NC_006151.1 + 97620 0.67 0.676071
Target:  5'- aCCUgCGAGCGGcgcgcggccaUGucguuggugcgcgcCGCCUCCUGGUc -3'
miRNA:   3'- aGGAgGCUCGCC----------AU--------------GUGGAGGACCGa -5'
29603 3' -59.4 NC_006151.1 + 84931 0.68 0.653024
Target:  5'- gCCUCCGGcgugcucuucggcacGUGGUACGCCacgcUCCaGGCc -3'
miRNA:   3'- aGGAGGCU---------------CGCCAUGUGG----AGGaCCGa -5'
29603 3' -59.4 NC_006151.1 + 135044 0.68 0.649005
Target:  5'- gUCCUCgGGGCGGUcCcCCUCCUcGUc -3'
miRNA:   3'- -AGGAGgCUCGCCAuGuGGAGGAcCGa -5'
29603 3' -59.4 NC_006151.1 + 73095 0.68 0.628886
Target:  5'- cCCUCCucGCcGUGCACCUCgCcGGCg -3'
miRNA:   3'- aGGAGGcuCGcCAUGUGGAG-GaCCGa -5'
29603 3' -59.4 NC_006151.1 + 28100 0.68 0.618826
Target:  5'- gUCCU-CGAGCGGggcGCGgCUCCUcgucGGCUc -3'
miRNA:   3'- -AGGAgGCUCGCCa--UGUgGAGGA----CCGA- -5'
29603 3' -59.4 NC_006151.1 + 53966 0.68 0.608776
Target:  5'- gCCagCG-GCGGcgGCGCCUCCgcgGGCg -3'
miRNA:   3'- aGGagGCuCGCCa-UGUGGAGGa--CCGa -5'
29603 3' -59.4 NC_006151.1 + 81663 0.68 0.608776
Target:  5'- uUCCcCCGcacggagcGGCGGUACGCCUC--GGCg -3'
miRNA:   3'- -AGGaGGC--------UCGCCAUGUGGAGgaCCGa -5'
29603 3' -59.4 NC_006151.1 + 108672 0.68 0.608776
Target:  5'- cCCUCagcagccgGAGCGGcggcccgaGCACCUCCUGGa- -3'
miRNA:   3'- aGGAGg-------CUCGCCa-------UGUGGAGGACCga -5'
29603 3' -59.4 NC_006151.1 + 138524 0.68 0.607772
Target:  5'- gUCCUCggggugaUGGGCGcGUACGCCggCCUGgGCg -3'
miRNA:   3'- -AGGAG-------GCUCGC-CAUGUGGa-GGAC-CGa -5'
29603 3' -59.4 NC_006151.1 + 5611 0.69 0.568813
Target:  5'- cCCUCCG-GCGGaggggGCGCCgccgCCgccgGGCg -3'
miRNA:   3'- aGGAGGCuCGCCa----UGUGGa---GGa---CCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.