miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29604 5' -58.3 NC_006151.1 + 52395 0.69 0.665252
Target:  5'- gGCGGcGGGCGCcgCCGCGcCCGAgaagucaaagugcucCUCGg -3'
miRNA:   3'- -CGCUcUCCGCGa-GGUGCaGGCU---------------GAGC- -5'
29604 5' -58.3 NC_006151.1 + 39126 0.69 0.67121
Target:  5'- cCGAG-GGCGCcCCGCGcCCGGCcUGg -3'
miRNA:   3'- cGCUCuCCGCGaGGUGCaGGCUGaGC- -5'
29604 5' -58.3 NC_006151.1 + 21446 0.69 0.67121
Target:  5'- cGUGGGGuggcccccggcGGCGUggucCCGCGUcgCCGGCUCGg -3'
miRNA:   3'- -CGCUCU-----------CCGCGa---GGUGCA--GGCUGAGC- -5'
29604 5' -58.3 NC_006151.1 + 2939 0.69 0.67121
Target:  5'- cGCGAgcaGAGGUaCUCCACGgcgCCGGCg-- -3'
miRNA:   3'- -CGCU---CUCCGcGAGGUGCa--GGCUGagc -5'
29604 5' -58.3 NC_006151.1 + 76813 0.69 0.681114
Target:  5'- gGCGAGggcGGGCGCguaguggcggcCCGCGUCCGGg-CGa -3'
miRNA:   3'- -CGCUC---UCCGCGa----------GGUGCAGGCUgaGC- -5'
29604 5' -58.3 NC_006151.1 + 139835 0.69 0.69098
Target:  5'- cGCGGGucGGCGCgacCCGCGUCaaCGAgCUCu -3'
miRNA:   3'- -CGCUCu-CCGCGa--GGUGCAG--GCU-GAGc -5'
29604 5' -58.3 NC_006151.1 + 111853 0.68 0.700799
Target:  5'- uCGGGGGGCGCUCgGgGUcgcaggCCGuCUCGc -3'
miRNA:   3'- cGCUCUCCGCGAGgUgCA------GGCuGAGC- -5'
29604 5' -58.3 NC_006151.1 + 96592 0.68 0.710564
Target:  5'- cGCGAGgcgccGGGCGCgggCGCG-CCGACgUCGu -3'
miRNA:   3'- -CGCUC-----UCCGCGag-GUGCaGGCUG-AGC- -5'
29604 5' -58.3 NC_006151.1 + 31736 0.68 0.710564
Target:  5'- -gGAGAGGCGC-CCGCG-CCGGg--- -3'
miRNA:   3'- cgCUCUCCGCGaGGUGCaGGCUgagc -5'
29604 5' -58.3 NC_006151.1 + 83104 0.68 0.710564
Target:  5'- uCGAGcGGGCGC-CCGCG-CCGgucgcagaGCUCGg -3'
miRNA:   3'- cGCUC-UCCGCGaGGUGCaGGC--------UGAGC- -5'
29604 5' -58.3 NC_006151.1 + 20481 0.68 0.710564
Target:  5'- -gGGGGGGCGCgggggucgUCgGCGgcUCUGGCUCGa -3'
miRNA:   3'- cgCUCUCCGCG--------AGgUGC--AGGCUGAGC- -5'
29604 5' -58.3 NC_006151.1 + 118959 0.68 0.710564
Target:  5'- cGCuGGAGGCGCUCguCGccgCCGGCg-- -3'
miRNA:   3'- -CGcUCUCCGCGAGguGCa--GGCUGagc -5'
29604 5' -58.3 NC_006151.1 + 122958 0.68 0.710564
Target:  5'- cGCGGGGGGCGCgg-ACG-CCGGCgaCGg -3'
miRNA:   3'- -CGCUCUCCGCGaggUGCaGGCUGa-GC- -5'
29604 5' -58.3 NC_006151.1 + 20147 0.68 0.716393
Target:  5'- cGCGGGGgcGGCGCguggaccgccgggCCGCGcCCGGgUCGc -3'
miRNA:   3'- -CGCUCU--CCGCGa------------GGUGCaGGCUgAGC- -5'
29604 5' -58.3 NC_006151.1 + 139556 0.68 0.729895
Target:  5'- aGCGAGGagcGGCGCccggUCCGCGagcgCCugGGCUCGc -3'
miRNA:   3'- -CGCUCU---CCGCG----AGGUGCa---GG--CUGAGC- -5'
29604 5' -58.3 NC_006151.1 + 44863 0.68 0.729895
Target:  5'- -gGGGGGGCGC-CCucucuCGcCCGACcUCGg -3'
miRNA:   3'- cgCUCUCCGCGaGGu----GCaGGCUG-AGC- -5'
29604 5' -58.3 NC_006151.1 + 82297 0.68 0.739444
Target:  5'- cGCGGGgcAGcGCGcCUCCGCGUCCG-Cg-- -3'
miRNA:   3'- -CGCUC--UC-CGC-GAGGUGCAGGCuGagc -5'
29604 5' -58.3 NC_006151.1 + 3137 0.68 0.739444
Target:  5'- gGCGcGGGGCGC-CCuCGgCgGGCUCGg -3'
miRNA:   3'- -CGCuCUCCGCGaGGuGCaGgCUGAGC- -5'
29604 5' -58.3 NC_006151.1 + 68780 0.68 0.745131
Target:  5'- cGCGGcGAGGUGCgccgCCGCGgccgucaucaggcCCGAgUCGa -3'
miRNA:   3'- -CGCU-CUCCGCGa---GGUGCa------------GGCUgAGC- -5'
29604 5' -58.3 NC_006151.1 + 95576 0.68 0.748904
Target:  5'- cCGAggccGAGGCGCUCCagGCGcUCGuACUCGc -3'
miRNA:   3'- cGCU----CUCCGCGAGG--UGCaGGC-UGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.