miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29607 3' -52.1 NC_006151.1 + 23132 0.66 0.985739
Target:  5'- cCCcUCCUC--CGUCGccgggcCCUCGGCGGg -3'
miRNA:   3'- aGGuAGGAGuuGCAGUu-----GGAGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 91708 0.66 0.985739
Target:  5'- gUCCAggUCCUCGAggccguCGUCGAa--CAGCGAc -3'
miRNA:   3'- -AGGU--AGGAGUU------GCAGUUggaGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 69032 0.66 0.985739
Target:  5'- aCCAgcUCCgcggUGGCGUCAaagACCggCAGCGGc -3'
miRNA:   3'- aGGU--AGGa---GUUGCAGU---UGGa-GUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 63745 0.66 0.985739
Target:  5'- cUCCGgcgCgUCGGCGgggCGuCCUCGGCGc -3'
miRNA:   3'- -AGGUa--GgAGUUGCa--GUuGGAGUCGCu -5'
29607 3' -52.1 NC_006151.1 + 6137 0.66 0.985031
Target:  5'- cUCCggCCgcggccgcgaggaCGGCGgccUCGGCCUCGGCGGc -3'
miRNA:   3'- -AGGuaGGa------------GUUGC---AGUUGGAGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 67828 0.66 0.98392
Target:  5'- gCCGUCgUCGucGCGggggcucagCAGCC-CGGCGAg -3'
miRNA:   3'- aGGUAGgAGU--UGCa--------GUUGGaGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 86413 0.66 0.98392
Target:  5'- aCCugcCCUCGGCGUCccuguCCUC-GCGGc -3'
miRNA:   3'- aGGua-GGAGUUGCAGuu---GGAGuCGCU- -5'
29607 3' -52.1 NC_006151.1 + 110968 0.66 0.98392
Target:  5'- -gCGUCCUCcACGaUCGcgugcGCCUCGGCc- -3'
miRNA:   3'- agGUAGGAGuUGC-AGU-----UGGAGUCGcu -5'
29607 3' -52.1 NC_006151.1 + 94298 0.66 0.981931
Target:  5'- gUCCGUCUcgagcCAGCgGUUGGCCacgcUCAGCGAg -3'
miRNA:   3'- -AGGUAGGa----GUUG-CAGUUGG----AGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 66001 0.66 0.979763
Target:  5'- -gCGUCCUCcgcGGCGUCGagcGCCUCcGCa- -3'
miRNA:   3'- agGUAGGAG---UUGCAGU---UGGAGuCGcu -5'
29607 3' -52.1 NC_006151.1 + 70349 0.66 0.977406
Target:  5'- aCCAUCCUCGGCuUCAugaACCaggcCAGCu- -3'
miRNA:   3'- aGGUAGGAGUUGcAGU---UGGa---GUCGcu -5'
29607 3' -52.1 NC_006151.1 + 79767 0.66 0.977406
Target:  5'- gUCCccgGUCCaCGGCGgccggaucgCGGCCUCGGCGc -3'
miRNA:   3'- -AGG---UAGGaGUUGCa--------GUUGGAGUCGCu -5'
29607 3' -52.1 NC_006151.1 + 24424 0.66 0.977406
Target:  5'- cCCGcgCCccaGACGUCGACCUUGGUGu -3'
miRNA:   3'- aGGUa-GGag-UUGCAGUUGGAGUCGCu -5'
29607 3' -52.1 NC_006151.1 + 135522 0.67 0.972098
Target:  5'- aUCaCGUCCUCGGCGgCGAgCggGGCGGg -3'
miRNA:   3'- -AG-GUAGGAGUUGCaGUUgGagUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 123657 0.67 0.972098
Target:  5'- gUCCGUCUUCcacugcgggGACGUCGAgguCCUCcgcGCGGa -3'
miRNA:   3'- -AGGUAGGAG---------UUGCAGUU---GGAGu--CGCU- -5'
29607 3' -52.1 NC_006151.1 + 19765 0.67 0.972098
Target:  5'- gCCGUCgaggUCAuCGUCGccgGCCUCGGUGGa -3'
miRNA:   3'- aGGUAGg---AGUuGCAGU---UGGAGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 59431 0.67 0.972098
Target:  5'- gCCAg-CUCGGCGUCGGCCgccgccgCcGCGAc -3'
miRNA:   3'- aGGUagGAGUUGCAGUUGGa------GuCGCU- -5'
29607 3' -52.1 NC_006151.1 + 26875 0.67 0.971811
Target:  5'- gUCGUCCUCGucgACGUCGcacuCCUCcccaaagAGCGGg -3'
miRNA:   3'- aGGUAGGAGU---UGCAGUu---GGAG-------UCGCU- -5'
29607 3' -52.1 NC_006151.1 + 138521 0.67 0.970343
Target:  5'- cUCGUCCUCGgggugaugggcgcguACGcCGGCCUgGGCGc -3'
miRNA:   3'- aGGUAGGAGU---------------UGCaGUUGGAgUCGCu -5'
29607 3' -52.1 NC_006151.1 + 18368 0.67 0.96913
Target:  5'- cUCGUCCUCGGCGUCcAGgCUCAcGUa- -3'
miRNA:   3'- aGGUAGGAGUUGCAG-UUgGAGU-CGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.