miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29607 5' -58.5 NC_006151.1 + 141454 0.68 0.69521
Target:  5'- cGUaGgaGGGCGGUCUGGAGCcggGGGCg -3'
miRNA:   3'- uCAgCgaCCUGCUGGACCUCGa--CCUG- -5'
29607 5' -58.5 NC_006151.1 + 138109 0.66 0.791081
Target:  5'- cGcCGCUGGcggacaugcugcGCGGCCUGGccgUGGACg -3'
miRNA:   3'- uCaGCGACC------------UGCUGGACCucgACCUG- -5'
29607 5' -58.5 NC_006151.1 + 137521 0.68 0.665029
Target:  5'- --gCGCcGGGCGACgaGGA-CUGGGCg -3'
miRNA:   3'- ucaGCGaCCUGCUGgaCCUcGACCUG- -5'
29607 5' -58.5 NC_006151.1 + 135759 0.7 0.524389
Target:  5'- cGUaCGCgugGGACGGCgCcGG-GCUGGACg -3'
miRNA:   3'- uCA-GCGa--CCUGCUG-GaCCuCGACCUG- -5'
29607 5' -58.5 NC_006151.1 + 135118 0.67 0.734682
Target:  5'- uAG-CGCgcgGGGCGGgCUGG-GCggGGACg -3'
miRNA:   3'- -UCaGCGa--CCUGCUgGACCuCGa-CCUG- -5'
29607 5' -58.5 NC_006151.1 + 122646 0.72 0.413521
Target:  5'- --aC-CUGGACGACCUGGAGC-GGcGCg -3'
miRNA:   3'- ucaGcGACCUGCUGGACCUCGaCC-UG- -5'
29607 5' -58.5 NC_006151.1 + 121427 0.68 0.663006
Target:  5'- cGUCGCgGGGCucgcgccGGCCUcgcuggugcccgcGGAGCUGGGg -3'
miRNA:   3'- uCAGCGaCCUG-------CUGGA-------------CCUCGACCUg -5'
29607 5' -58.5 NC_006151.1 + 121311 0.66 0.763397
Target:  5'- gGG-CGCUGGagcguggagGCGGCCgccGAGCUGGuGCg -3'
miRNA:   3'- -UCaGCGACC---------UGCUGGac-CUCGACC-UG- -5'
29607 5' -58.5 NC_006151.1 + 120903 0.77 0.240525
Target:  5'- --cCGCUGGugGugCUGGGcCUGGGCg -3'
miRNA:   3'- ucaGCGACCugCugGACCUcGACCUG- -5'
29607 5' -58.5 NC_006151.1 + 116977 0.69 0.594061
Target:  5'- cGUCGCUGGACG-UgaGGcGCUGGuGCc -3'
miRNA:   3'- uCAGCGACCUGCuGgaCCuCGACC-UG- -5'
29607 5' -58.5 NC_006151.1 + 113323 0.67 0.734682
Target:  5'- --aCGCUGGGgccCGugCUGGcGCUGGcGCu -3'
miRNA:   3'- ucaGCGACCU---GCugGACCuCGACC-UG- -5'
29607 5' -58.5 NC_006151.1 + 110863 0.69 0.61431
Target:  5'- uAGUCGCUGGugGCGAacaUGG-GCUGGcGCu -3'
miRNA:   3'- -UCAGCGACC--UGCUgg-ACCuCGACC-UG- -5'
29607 5' -58.5 NC_006151.1 + 110018 0.68 0.665029
Target:  5'- ---aGCUGGACc-CCUGGGGcCUGGAg -3'
miRNA:   3'- ucagCGACCUGcuGGACCUC-GACCUg -5'
29607 5' -58.5 NC_006151.1 + 106316 0.74 0.325569
Target:  5'- aAGaCGCUGGACgcgGugCUGGAccgcgcGCUGGACg -3'
miRNA:   3'- -UCaGCGACCUG---CugGACCU------CGACCUG- -5'
29607 5' -58.5 NC_006151.1 + 105253 0.7 0.553945
Target:  5'- aGGUCGCcugGGACGagGCCUGGgAGgacuUUGGGCg -3'
miRNA:   3'- -UCAGCGa--CCUGC--UGGACC-UC----GACCUG- -5'
29607 5' -58.5 NC_006151.1 + 103876 0.69 0.634611
Target:  5'- gGGaCGCUGGuCGAggcgcgccaCCUGGcGCUGGAg -3'
miRNA:   3'- -UCaGCGACCuGCU---------GGACCuCGACCUg -5'
29607 5' -58.5 NC_006151.1 + 103702 0.68 0.69521
Target:  5'- cGcCGCcgUGGAgcACCcGGAGCUGGGCu -3'
miRNA:   3'- uCaGCG--ACCUgcUGGaCCUCGACCUG- -5'
29607 5' -58.5 NC_006151.1 + 103400 0.66 0.791081
Target:  5'- --cUGCUGGGCGACUUuGccacGCUGGGCc -3'
miRNA:   3'- ucaGCGACCUGCUGGAcCu---CGACCUG- -5'
29607 5' -58.5 NC_006151.1 + 103067 0.66 0.763397
Target:  5'- cAGgCGCacGGGC-ACCUGGAGCggcgcgagcUGGACa -3'
miRNA:   3'- -UCaGCGa-CCUGcUGGACCUCG---------ACCUG- -5'
29607 5' -58.5 NC_006151.1 + 102916 0.7 0.544033
Target:  5'- -cUCGCUGG-CGGCCgccgaGGAGCggcugcgcgcgcUGGACg -3'
miRNA:   3'- ucAGCGACCuGCUGGa----CCUCG------------ACCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.