miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 3' -54.7 NC_006151.1 + 90681 0.7 0.730285
Target:  5'- cGCUUGUCCcccgcggcgggggcgGCGGACGCGcCCGc--- -3'
miRNA:   3'- uCGAGCAGG---------------UGCCUGCGCuGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 20137 0.7 0.746201
Target:  5'- gGGCgggCG-CCGCGGGgGCGGCgCGUGGAc -3'
miRNA:   3'- -UCGa--GCaGGUGCCUgCGCUG-GUAUUU- -5'
29609 3' -54.7 NC_006151.1 + 4852 0.7 0.753083
Target:  5'- cGCgggaGUCCccggcgccgccguaGCGGACGCGGCCGUc-- -3'
miRNA:   3'- uCGag--CAGG--------------UGCCUGCGCUGGUAuuu -5'
29609 3' -54.7 NC_006151.1 + 132665 0.7 0.756016
Target:  5'- -cCUCGUCCGCGGAgGcCGACagCAUGAc -3'
miRNA:   3'- ucGAGCAGGUGCCUgC-GCUG--GUAUUu -5'
29609 3' -54.7 NC_006151.1 + 84810 0.7 0.756016
Target:  5'- aGGCgaccgCGgCCGCGGACGgGGCCGcGAGg -3'
miRNA:   3'- -UCGa----GCaGGUGCCUGCgCUGGUaUUU- -5'
29609 3' -54.7 NC_006151.1 + 21350 0.7 0.765717
Target:  5'- cGGCUgGaacggcUCCGCGGGCuGCGGCCAc--- -3'
miRNA:   3'- -UCGAgC------AGGUGCCUG-CGCUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 69595 0.7 0.775296
Target:  5'- gAGCUCGgCCGCGcGGCGC-ACCAg--- -3'
miRNA:   3'- -UCGAGCaGGUGC-CUGCGcUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 89578 0.7 0.775296
Target:  5'- gGGCaCGcCCAUGGGCucgccgGCGGCCGUGAGg -3'
miRNA:   3'- -UCGaGCaGGUGCCUG------CGCUGGUAUUU- -5'
29609 3' -54.7 NC_006151.1 + 75042 0.69 0.784741
Target:  5'- gGGgaCGUCCAccuCGGGCGCGACgAaGAAg -3'
miRNA:   3'- -UCgaGCAGGU---GCCUGCGCUGgUaUUU- -5'
29609 3' -54.7 NC_006151.1 + 106110 0.69 0.784741
Target:  5'- aGGC-CG-CCGCGGAgacguaCGCGGCCGUGc- -3'
miRNA:   3'- -UCGaGCaGGUGCCU------GCGCUGGUAUuu -5'
29609 3' -54.7 NC_006151.1 + 141305 0.69 0.794043
Target:  5'- gGGCUCGUaCGCGGGCGgGuCCGg--- -3'
miRNA:   3'- -UCGAGCAgGUGCCUGCgCuGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 62099 0.69 0.794043
Target:  5'- cGgUCGgCCugGG-CGCGGCCGUGGu -3'
miRNA:   3'- uCgAGCaGGugCCuGCGCUGGUAUUu -5'
29609 3' -54.7 NC_006151.1 + 36118 0.69 0.794043
Target:  5'- cGC-CGUCCucGCGGcCGCGGCCGg--- -3'
miRNA:   3'- uCGaGCAGG--UGCCuGCGCUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 68844 0.69 0.794043
Target:  5'- uGCUCGaggcgCCGCGcGACGCGuCCAg--- -3'
miRNA:   3'- uCGAGCa----GGUGC-CUGCGCuGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 96549 0.69 0.803194
Target:  5'- gAGCcCGUCCACGGcGCGCG-UgAUAAAc -3'
miRNA:   3'- -UCGaGCAGGUGCC-UGCGCuGgUAUUU- -5'
29609 3' -54.7 NC_006151.1 + 141404 0.69 0.803194
Target:  5'- cGGCgUGUCCggcgaucgguGCGGGCGCGGCCcgGc- -3'
miRNA:   3'- -UCGaGCAGG----------UGCCUGCGCUGGuaUuu -5'
29609 3' -54.7 NC_006151.1 + 57508 0.69 0.812184
Target:  5'- cGCUCGgCCGCGGcgGCGgCGGCCGc--- -3'
miRNA:   3'- uCGAGCaGGUGCC--UGC-GCUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 4393 0.69 0.821004
Target:  5'- cGGCgcggggGUCCGCGG-CGCGGCCcgGGu -3'
miRNA:   3'- -UCGag----CAGGUGCCuGCGCUGGuaUUu -5'
29609 3' -54.7 NC_006151.1 + 58947 0.69 0.821004
Target:  5'- cGCaaaGUCCACGGcccccucgguGCGCGGCCAc--- -3'
miRNA:   3'- uCGag-CAGGUGCC----------UGCGCUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 114935 0.68 0.829646
Target:  5'- cGCUCGgccUCCGgggUGGGCGCGAUgAUGAc -3'
miRNA:   3'- uCGAGC---AGGU---GCCUGCGCUGgUAUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.