miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 3' -54.7 NC_006151.1 + 141404 0.69 0.803194
Target:  5'- cGGCgUGUCCggcgaucgguGCGGGCGCGGCCcgGc- -3'
miRNA:   3'- -UCGaGCAGG----------UGCCUGCGCUGGuaUuu -5'
29609 3' -54.7 NC_006151.1 + 141305 0.69 0.794043
Target:  5'- gGGCUCGUaCGCGGGCGgGuCCGg--- -3'
miRNA:   3'- -UCGAGCAgGUGCCUGCgCuGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 138231 0.67 0.891453
Target:  5'- gGGCgcgCGcacgaguaCGCGGGCGCGACCGc--- -3'
miRNA:   3'- -UCGa--GCag------GUGCCUGCGCUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 138163 0.75 0.471474
Target:  5'- cGCUCGaggCCuucgugGCGGACGUGGCCAUGGc -3'
miRNA:   3'- uCGAGCa--GG------UGCCUGCGCUGGUAUUu -5'
29609 3' -54.7 NC_006151.1 + 137027 0.66 0.916865
Target:  5'- uGCUCGgCCugcCGGACGCGugCc---- -3'
miRNA:   3'- uCGAGCaGGu--GCCUGCGCugGuauuu -5'
29609 3' -54.7 NC_006151.1 + 134336 0.68 0.86227
Target:  5'- gGGCaUCG-CCACGGACGUGcCCu---- -3'
miRNA:   3'- -UCG-AGCaGGUGCCUGCGCuGGuauuu -5'
29609 3' -54.7 NC_006151.1 + 132665 0.7 0.756016
Target:  5'- -cCUCGUCCGCGGAgGcCGACagCAUGAc -3'
miRNA:   3'- ucGAGCAGGUGCCUgC-GCUG--GUAUUu -5'
29609 3' -54.7 NC_006151.1 + 131772 0.66 0.922605
Target:  5'- cGCgaccgCGgCCGCGGGCGCcGCCGUc-- -3'
miRNA:   3'- uCGa----GCaGGUGCCUGCGcUGGUAuuu -5'
29609 3' -54.7 NC_006151.1 + 130269 0.66 0.916865
Target:  5'- cGGCgcgCGgccccgaggCCGCGGGCGCGcGCCGg--- -3'
miRNA:   3'- -UCGa--GCa--------GGUGCCUGCGC-UGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 128726 0.72 0.664759
Target:  5'- cGCUCGUCUggGGGCugaGACCAUGGGg -3'
miRNA:   3'- uCGAGCAGGugCCUGcg-CUGGUAUUU- -5'
29609 3' -54.7 NC_006151.1 + 124074 0.66 0.93334
Target:  5'- cGGC-CGUgCgCGCGGcCGCGACCGa--- -3'
miRNA:   3'- -UCGaGCA-G-GUGCCuGCGCUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 123888 0.71 0.702935
Target:  5'- cGCUCG-CCGCGGccccgccgugcggcGCgGCGGCCGUGAc -3'
miRNA:   3'- uCGAGCaGGUGCC--------------UG-CGCUGGUAUUu -5'
29609 3' -54.7 NC_006151.1 + 122780 0.67 0.891453
Target:  5'- uGCUCGUggGCGGcuGCGCGGCCu---- -3'
miRNA:   3'- uCGAGCAggUGCC--UGCGCUGGuauuu -5'
29609 3' -54.7 NC_006151.1 + 122702 0.66 0.93334
Target:  5'- gAGCUCGcgcUCUuCGGGCGgCGGCCcgAGc -3'
miRNA:   3'- -UCGAGC---AGGuGCCUGC-GCUGGuaUUu -5'
29609 3' -54.7 NC_006151.1 + 122412 0.66 0.928097
Target:  5'- cGCUCGccgCCGUGGACGCcGCCGa--- -3'
miRNA:   3'- uCGAGCa--GGUGCCUGCGcUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 122375 0.67 0.891453
Target:  5'- gGGCUCGacgaggcgcgCCGCGGGCGCGcGCUg---- -3'
miRNA:   3'- -UCGAGCa---------GGUGCCUGCGC-UGGuauuu -5'
29609 3' -54.7 NC_006151.1 + 120772 0.68 0.846362
Target:  5'- uGCggCGcCCgcugGCGGACGCGGCCGa--- -3'
miRNA:   3'- uCGa-GCaGG----UGCCUGCGCUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 119756 0.67 0.898169
Target:  5'- cGGCUC--UgGCGGACGUGGCCGg--- -3'
miRNA:   3'- -UCGAGcaGgUGCCUGCGCUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 119061 0.7 0.726269
Target:  5'- cGGC-CGccUCCGCGGGCGCGcCCGUc-- -3'
miRNA:   3'- -UCGaGC--AGGUGCCUGCGCuGGUAuuu -5'
29609 3' -54.7 NC_006151.1 + 118452 0.72 0.633507
Target:  5'- cGGCUCGgccuggCCGCGGACGCGcACgCGg--- -3'
miRNA:   3'- -UCGAGCa-----GGUGCCUGCGC-UG-GUauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.