Results 21 - 40 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29609 | 5' | -62.1 | NC_006151.1 | + | 133650 | 0.71 | 0.324535 |
Target: 5'- -gUCCGgGUGCgagagGCGCugCCGGCGCGGcGg -3' miRNA: 3'- ugAGGUgCACGa----CGCG--GGUCGCGCC-C- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 97725 | 0.71 | 0.324535 |
Target: 5'- aGCcCCccgaggACGUGCaGCGCgCGGUGCGGGa -3' miRNA: 3'- -UGaGG------UGCACGaCGCGgGUCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 5084 | 0.71 | 0.330977 |
Target: 5'- cGCggggCCGCGgcggGCgccgGCggagacgguggcgGCCCGGCGCGGGc -3' miRNA: 3'- -UGa---GGUGCa---CGa---CG-------------CGGGUCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 71680 | 0.71 | 0.331699 |
Target: 5'- cACgggCCGCGUGCcgagcgUGuCGCCCAGcCGCGaGGc -3' miRNA: 3'- -UGa--GGUGCACG------AC-GCGGGUC-GCGC-CC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 118734 | 0.71 | 0.331699 |
Target: 5'- cACggCUACGUGCUGgGCCCGGCGg--- -3' miRNA: 3'- -UGa-GGUGCACGACgCGGGUCGCgccc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 80403 | 0.71 | 0.331699 |
Target: 5'- -aUCCACGUuagGCGCCCGGUgggaaauguguGCGGGg -3' miRNA: 3'- ugAGGUGCAcgaCGCGGGUCG-----------CGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 82613 | 0.71 | 0.346373 |
Target: 5'- gGC-CCGCGcGCggGCGCCgCggugGGCGCGGGa -3' miRNA: 3'- -UGaGGUGCaCGa-CGCGG-G----UCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 27268 | 0.71 | 0.346373 |
Target: 5'- uACUCgGgGUGCUcgacgacguaGCGCCCgcgcuuggggGGCGUGGGg -3' miRNA: 3'- -UGAGgUgCACGA----------CGCGGG----------UCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 94937 | 0.71 | 0.353882 |
Target: 5'- uGCUCCGCGaUGCgGaCGCgCAGCGCGu- -3' miRNA: 3'- -UGAGGUGC-ACGaC-GCGgGUCGCGCcc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 73307 | 0.71 | 0.353882 |
Target: 5'- -gUCCGCGU-CcGCGUCCAGCauggGCGGGg -3' miRNA: 3'- ugAGGUGCAcGaCGCGGGUCG----CGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 64473 | 0.71 | 0.361506 |
Target: 5'- cGCgccgCCGCG-GCgggGaCGCCCgcgGGCGCGGGc -3' miRNA: 3'- -UGa---GGUGCaCGa--C-GCGGG---UCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 76635 | 0.71 | 0.361506 |
Target: 5'- cGCUCCAuCGUGUgGCGacgaCCGcGUGCGGGc -3' miRNA: 3'- -UGAGGU-GCACGaCGCg---GGU-CGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 117782 | 0.71 | 0.369243 |
Target: 5'- gGCUCCggGCGggGCgccaCGCCCGGCgggGCGGGg -3' miRNA: 3'- -UGAGG--UGCa-CGac--GCGGGUCG---CGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 134310 | 0.71 | 0.369243 |
Target: 5'- uAUUgCACGccGCUGCGCCUcGCGcCGGGc -3' miRNA: 3'- -UGAgGUGCa-CGACGCGGGuCGC-GCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 88860 | 0.71 | 0.369243 |
Target: 5'- cGCUcCCGCG-GgaGCuCCgGGCGCGGGg -3' miRNA: 3'- -UGA-GGUGCaCgaCGcGGgUCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 73096 | 0.71 | 0.37237 |
Target: 5'- cCUCCucgcCGUGCaccucgccggcggcGCGCCC-GCGCGGGu -3' miRNA: 3'- uGAGGu---GCACGa-------------CGCGGGuCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 82400 | 0.7 | 0.377093 |
Target: 5'- aGCUCCGCGcccgaggGCgGC-CCCgagaGGCGCGGGc -3' miRNA: 3'- -UGAGGUGCa------CGaCGcGGG----UCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 77081 | 0.7 | 0.385055 |
Target: 5'- gGCUcaCCACGUGCga-GCUgaAGCGCGGGc -3' miRNA: 3'- -UGA--GGUGCACGacgCGGg-UCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 100897 | 0.7 | 0.385055 |
Target: 5'- uGCgCCGCG-GCgcgcgcGCGCCCgacgacgcgAGCGCGGGc -3' miRNA: 3'- -UGaGGUGCaCGa-----CGCGGG---------UCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 10625 | 0.7 | 0.385055 |
Target: 5'- cGC-CCGCGUGCgcucGUG-CCGGCGCGGc -3' miRNA: 3'- -UGaGGUGCACGa---CGCgGGUCGCGCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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