miRNA display CGI


Results 1 - 20 of 148 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 5' -62.1 NC_006151.1 + 138702 0.69 0.426489
Target:  5'- cGCUgagCC-CGgcGCUGCGCgCCGcGCGCGGGu -3'
miRNA:   3'- -UGA---GGuGCa-CGACGCG-GGU-CGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 137276 0.66 0.593783
Target:  5'- uGC-CCGCGggcacGCUcgagGCGgCCAuGCGCGGGu -3'
miRNA:   3'- -UGaGGUGCa----CGA----CGCgGGU-CGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 136961 0.66 0.632184
Target:  5'- uGCgCCGCcUGCUggagcuggccgccGCGCCgGGCgGCGGGc -3'
miRNA:   3'- -UGaGGUGcACGA-------------CGCGGgUCG-CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 136386 0.66 0.643032
Target:  5'- cGCUCuCGCGcuucUGCUgccugaGCGgCUAcGCGCGGGg -3'
miRNA:   3'- -UGAG-GUGC----ACGA------CGCgGGU-CGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 135454 0.66 0.652887
Target:  5'- gGCaggCCugGUaGgUGCGCgCCAgcguguccGCGCGGGc -3'
miRNA:   3'- -UGa--GGugCA-CgACGCG-GGU--------CGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 134310 0.71 0.369243
Target:  5'- uAUUgCACGccGCUGCGCCUcGCGcCGGGc -3'
miRNA:   3'- -UGAgGUGCa-CGACGCGGGuCGC-GCCC- -5'
29609 5' -62.1 NC_006151.1 + 134194 0.69 0.470457
Target:  5'- ---aCGCGaUGCUcGuCGCgCAGCGCGGGg -3'
miRNA:   3'- ugagGUGC-ACGA-C-GCGgGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 133650 0.71 0.324535
Target:  5'- -gUCCGgGUGCgagagGCGCugCCGGCGCGGcGg -3'
miRNA:   3'- ugAGGUgCACGa----CGCG--GGUCGCGCC-C- -5'
29609 5' -62.1 NC_006151.1 + 133152 0.66 0.63317
Target:  5'- gACUCgGCG-GCgGCG-CgGGCGUGGGc -3'
miRNA:   3'- -UGAGgUGCaCGaCGCgGgUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 132750 0.66 0.603607
Target:  5'- cGCUCCAUG----GCGCCCAGCagcgcCGGGc -3'
miRNA:   3'- -UGAGGUGCacgaCGCGGGUCGc----GCCC- -5'
29609 5' -62.1 NC_006151.1 + 132306 0.66 0.651902
Target:  5'- -gUCCGCGUGCagGCGCCaCGagagcucGCGCGc- -3'
miRNA:   3'- ugAGGUGCACGa-CGCGG-GU-------CGCGCcc -5'
29609 5' -62.1 NC_006151.1 + 131927 0.67 0.574219
Target:  5'- cCUCCGCgGUGCUGCcguagcugGCCacgggcgAGgGCGGGc -3'
miRNA:   3'- uGAGGUG-CACGACG--------CGGg------UCgCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 131492 0.66 0.623307
Target:  5'- cCUgCAgGUGCaccagGaGCCCcGCGCGGGg -3'
miRNA:   3'- uGAgGUgCACGa----CgCGGGuCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 131097 0.72 0.290452
Target:  5'- -gUCCACGUcgGCgggGgGCCCggccgcGGCGCGGGa -3'
miRNA:   3'- ugAGGUGCA--CGa--CgCGGG------UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 130366 0.7 0.409596
Target:  5'- gACggCCGCGcGCgccgcgGCGUCCAGCGCGa- -3'
miRNA:   3'- -UGa-GGUGCaCGa-----CGCGGGUCGCGCcc -5'
29609 5' -62.1 NC_006151.1 + 129741 0.68 0.526074
Target:  5'- gGC-CCGCGaggcGCUGCaGCaCCAGCGCGa- -3'
miRNA:   3'- -UGaGGUGCa---CGACG-CG-GGUCGCGCcc -5'
29609 5' -62.1 NC_006151.1 + 129645 0.66 0.623307
Target:  5'- aGCUCCGCGUaGU--CGUCCAGCGCc-- -3'
miRNA:   3'- -UGAGGUGCA-CGacGCGGGUCGCGccc -5'
29609 5' -62.1 NC_006151.1 + 129597 0.68 0.507232
Target:  5'- aACUCCGCGagcggGCacgUGCGCaCCAGCG-GGu -3'
miRNA:   3'- -UGAGGUGCa----CG---ACGCG-GGUCGCgCCc -5'
29609 5' -62.1 NC_006151.1 + 128781 0.69 0.452585
Target:  5'- cGCUCCACG-GCcucgGuCGCCUcggcgAGCGCGGc -3'
miRNA:   3'- -UGAGGUGCaCGa---C-GCGGG-----UCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 127977 0.67 0.583985
Target:  5'- -gUCCACGUacucgugcggcgGCUccGCGUCgCGGuCGCGGGg -3'
miRNA:   3'- ugAGGUGCA------------CGA--CGCGG-GUC-GCGCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.