miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29611 5' -57 NC_006151.1 + 98285 0.66 0.874127
Target:  5'- cGACCACGCcgUCGccACGGUGGUgCAg-- -3'
miRNA:   3'- -CUGGUGCG--AGCacUGCCGCCA-GUaca -5'
29611 5' -57 NC_006151.1 + 133342 0.66 0.874127
Target:  5'- cGGCCG-GUUcCGcGGCGGCGGUgGUGg -3'
miRNA:   3'- -CUGGUgCGA-GCaCUGCCGCCAgUACa -5'
29611 5' -57 NC_006151.1 + 5543 0.66 0.874127
Target:  5'- aGCCGC-CUCGcGGCGGCGGgcUCGUc- -3'
miRNA:   3'- cUGGUGcGAGCaCUGCCGCC--AGUAca -5'
29611 5' -57 NC_006151.1 + 57502 0.66 0.866794
Target:  5'- cGCaCGCGCUCGgccgcGGCGGCGG-CGg-- -3'
miRNA:   3'- cUG-GUGCGAGCa----CUGCCGCCaGUaca -5'
29611 5' -57 NC_006151.1 + 99579 0.66 0.859253
Target:  5'- uGCUGCGCgagGUGGCGGCGGcCGa-- -3'
miRNA:   3'- cUGGUGCGag-CACUGCCGCCaGUaca -5'
29611 5' -57 NC_006151.1 + 138156 0.66 0.859253
Target:  5'- cGGCgCGCGCUCGaGGCcuucguGGCGGaCGUGg -3'
miRNA:   3'- -CUG-GUGCGAGCaCUG------CCGCCaGUACa -5'
29611 5' -57 NC_006151.1 + 5441 0.66 0.859253
Target:  5'- gGGCCGCGggcgacgguCUCGacggcGACGGUGGUgGUGg -3'
miRNA:   3'- -CUGGUGC---------GAGCa----CUGCCGCCAgUACa -5'
29611 5' -57 NC_006151.1 + 44345 0.66 0.859253
Target:  5'- gGGCCGCGgaCGgguggGACGGCGGg----- -3'
miRNA:   3'- -CUGGUGCgaGCa----CUGCCGCCaguaca -5'
29611 5' -57 NC_006151.1 + 77385 0.66 0.843566
Target:  5'- gGACCGCGCguacuUUGUGcACGGgGGcugcaUCGUGUc -3'
miRNA:   3'- -CUGGUGCG-----AGCAC-UGCCgCC-----AGUACA- -5'
29611 5' -57 NC_006151.1 + 136983 0.67 0.835434
Target:  5'- cGCCGCGC-CG-GGCGGCGGgcgCGc-- -3'
miRNA:   3'- cUGGUGCGaGCaCUGCCGCCa--GUaca -5'
29611 5' -57 NC_006151.1 + 45087 0.67 0.827118
Target:  5'- cACCGCGCggUGUGGCGucgauGgGGUCGUGc -3'
miRNA:   3'- cUGGUGCGa-GCACUGC-----CgCCAGUACa -5'
29611 5' -57 NC_006151.1 + 125525 0.67 0.826277
Target:  5'- uGGCCAucuCGCggugCGUGgaggugcGCGGCGG-CGUGUa -3'
miRNA:   3'- -CUGGU---GCGa---GCAC-------UGCCGCCaGUACA- -5'
29611 5' -57 NC_006151.1 + 122021 0.67 0.818626
Target:  5'- -gUCGCGCUCGacacGuACGGCGGgcgCGUGg -3'
miRNA:   3'- cuGGUGCGAGCa---C-UGCCGCCa--GUACa -5'
29611 5' -57 NC_006151.1 + 102634 0.67 0.809967
Target:  5'- uGAgCGCGCUCGaGGCGGCGcUCGa-- -3'
miRNA:   3'- -CUgGUGCGAGCaCUGCCGCcAGUaca -5'
29611 5' -57 NC_006151.1 + 21595 0.67 0.809967
Target:  5'- cGAUgGCGUacggCGUGGCGGCGG-CGUa- -3'
miRNA:   3'- -CUGgUGCGa---GCACUGCCGCCaGUAca -5'
29611 5' -57 NC_006151.1 + 48093 0.67 0.801148
Target:  5'- aGCCGCgaugucgccGCUCGUGGCGGUGcUgGUGUu -3'
miRNA:   3'- cUGGUG---------CGAGCACUGCCGCcAgUACA- -5'
29611 5' -57 NC_006151.1 + 94318 0.67 0.801148
Target:  5'- uGGCCACGCUCaGcGAgcggaGGUGGUcCAUGUc -3'
miRNA:   3'- -CUGGUGCGAG-CaCUg----CCGCCA-GUACA- -5'
29611 5' -57 NC_006151.1 + 112044 0.67 0.801148
Target:  5'- gGGCCgGCGggCGggcGGCGGCGGUgGUGg -3'
miRNA:   3'- -CUGG-UGCgaGCa--CUGCCGCCAgUACa -5'
29611 5' -57 NC_006151.1 + 62042 0.67 0.792177
Target:  5'- cGCUGCGCcgCGUGGCGGUGcacgcgcgcgccGUCGUGa -3'
miRNA:   3'- cUGGUGCGa-GCACUGCCGC------------CAGUACa -5'
29611 5' -57 NC_006151.1 + 122672 0.68 0.783063
Target:  5'- cGCCGCGCcgagGUGcgcGCGGCGGcCGUGg -3'
miRNA:   3'- cUGGUGCGag--CAC---UGCCGCCaGUACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.