miRNA display CGI


Results 1 - 20 of 453 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29612 3' -51.2 NC_006151.1 + 107539 0.83 0.300057
Target:  5'- gCCCCGGcggcccCGCCGGCGCCGCCGc -3'
miRNA:   3'- -GGGGCUuuuuuuGUGGUCGUGGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 113212 0.83 0.329884
Target:  5'- gCCgCCGAG--GAGCGCCGGCACCGCg- -3'
miRNA:   3'- -GG-GGCUUuuUUUGUGGUCGUGGCGgu -5'
29612 3' -51.2 NC_006151.1 + 39756 0.81 0.387183
Target:  5'- aCCCGGAcuuuGACGCgGGCGCCGCCu -3'
miRNA:   3'- gGGGCUUuuu-UUGUGgUCGUGGCGGu -5'
29612 3' -51.2 NC_006151.1 + 135171 0.81 0.404715
Target:  5'- gCCCGGAc-GGGCGCCGGCuGCCGCCGc -3'
miRNA:   3'- gGGGCUUuuUUUGUGGUCG-UGGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 100086 0.8 0.441238
Target:  5'- gCUCGAGGcgccGGCGCCGGCGCCGCCc -3'
miRNA:   3'- gGGGCUUUuu--UUGUGGUCGUGGCGGu -5'
29612 3' -51.2 NC_006151.1 + 52413 0.79 0.473704
Target:  5'- gCCCGAGAAGucaaagugcuccucgGGCACgcgCAGCGCCGCCGc -3'
miRNA:   3'- gGGGCUUUUU---------------UUGUG---GUCGUGGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 48798 0.79 0.479558
Target:  5'- aCCCCGggGcgcccacguGGGACGCCuuCGCCGCCGa -3'
miRNA:   3'- -GGGGCuuU---------UUUUGUGGucGUGGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 139784 0.79 0.489392
Target:  5'- cCCCCGAucgucugucGGAGAGCGCgC-GCGCCGCCGu -3'
miRNA:   3'- -GGGGCU---------UUUUUUGUG-GuCGUGGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 11584 0.79 0.489392
Target:  5'- cCCgCCGggGGAGGCuucccggaACCAGCGCgGCCAu -3'
miRNA:   3'- -GG-GGCuuUUUUUG--------UGGUCGUGgCGGU- -5'
29612 3' -51.2 NC_006151.1 + 76873 0.79 0.49932
Target:  5'- gCCgCCGccAGGAGCcCCAGCGCCGCCu -3'
miRNA:   3'- -GG-GGCuuUUUUUGuGGUCGUGGCGGu -5'
29612 3' -51.2 NC_006151.1 + 136224 0.79 0.509336
Target:  5'- gCCCCGAggAGAAGACGCUGGUGCUgGCCAc -3'
miRNA:   3'- -GGGGCU--UUUUUUGUGGUCGUGG-CGGU- -5'
29612 3' -51.2 NC_006151.1 + 81366 0.78 0.529613
Target:  5'- gCCCCGGc--GGGCGCCAGCGCgaGCCGc -3'
miRNA:   3'- -GGGGCUuuuUUUGUGGUCGUGg-CGGU- -5'
29612 3' -51.2 NC_006151.1 + 117576 0.78 0.550179
Target:  5'- uCCCCGcgGAGGAUggGCCgcguGGCGCCGCCGc -3'
miRNA:   3'- -GGGGCuuUUUUUG--UGG----UCGUGGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 108712 0.78 0.550179
Target:  5'- cCCCCGGGAGuGGugGCCAGCGCCGa-- -3'
miRNA:   3'- -GGGGCUUUU-UUugUGGUCGUGGCggu -5'
29612 3' -51.2 NC_006151.1 + 52378 0.78 0.550179
Target:  5'- cCCCCGggGcccgcgGGGGCgGCgGGCGCCGCCGc -3'
miRNA:   3'- -GGGGCuuU------UUUUG-UGgUCGUGGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 140280 0.78 0.559514
Target:  5'- gCCCGucgacgagcucguGCGCCGGCGCCGCCu -3'
miRNA:   3'- gGGGCuuuuuu-------UGUGGUCGUGGCGGu -5'
29612 3' -51.2 NC_006151.1 + 114404 0.78 0.560554
Target:  5'- uCCCCGAGAAGucgguGCACguGCACCaCCGc -3'
miRNA:   3'- -GGGGCUUUUUu----UGUGguCGUGGcGGU- -5'
29612 3' -51.2 NC_006151.1 + 135315 0.77 0.570983
Target:  5'- -aCCGAGAGGuacagguGCAUgAGCGCCGCCAg -3'
miRNA:   3'- ggGGCUUUUUu------UGUGgUCGUGGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 3864 0.77 0.570983
Target:  5'- -gCCGGAGGGGGCGCCcGcCGCCGCCGg -3'
miRNA:   3'- ggGGCUUUUUUUGUGGuC-GUGGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 81923 0.77 0.581459
Target:  5'- gCCUCGGAGAAGacgaaggcggccACGCCGaggcGCACCGCCGc -3'
miRNA:   3'- -GGGGCUUUUUU------------UGUGGU----CGUGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.