miRNA display CGI


Results 1 - 20 of 453 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29612 3' -51.2 NC_006151.1 + 570 0.69 0.936416
Target:  5'- cCCCCGGAcguGACGCCGGU-CC-CCAc -3'
miRNA:   3'- -GGGGCUUuuuUUGUGGUCGuGGcGGU- -5'
29612 3' -51.2 NC_006151.1 + 633 0.75 0.707836
Target:  5'- cCCCCGGAcguGACGCCGGCuuccggggcGCgGCCGg -3'
miRNA:   3'- -GGGGCUUuuuUUGUGGUCG---------UGgCGGU- -5'
29612 3' -51.2 NC_006151.1 + 675 0.67 0.977225
Target:  5'- gCUCCGcgGAucGCAUCGGCG-CGCCGa -3'
miRNA:   3'- -GGGGCuuUUuuUGUGGUCGUgGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 1166 0.67 0.981799
Target:  5'- aCCCGccGGGAcCACCAaCACCGuCCAc -3'
miRNA:   3'- gGGGCuuUUUUuGUGGUcGUGGC-GGU- -5'
29612 3' -51.2 NC_006151.1 + 1806 0.74 0.728386
Target:  5'- -gCCGggGAggcAGGCGCCggggaggcaAGCGCCGCCGg -3'
miRNA:   3'- ggGGCuuUU---UUUGUGG---------UCGUGGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 2103 0.69 0.954576
Target:  5'- gCCCGAGcgGGccGCgggGCCGGCcgucGCCGCCGc -3'
miRNA:   3'- gGGGCUUuuUU--UG---UGGUCG----UGGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 2162 0.66 0.991449
Target:  5'- uCCCCGuccu---CGCCGGgGCCgGCCc -3'
miRNA:   3'- -GGGGCuuuuuuuGUGGUCgUGG-CGGu -5'
29612 3' -51.2 NC_006151.1 + 2252 0.68 0.965633
Target:  5'- gUCUCGAAGGGGGCAaaguCCcagAGCACgGCCGg -3'
miRNA:   3'- -GGGGCUUUUUUUGU----GG---UCGUGgCGGU- -5'
29612 3' -51.2 NC_006151.1 + 2311 0.76 0.623672
Target:  5'- gCCCGggGucAGCACCAGCgggGCgGCCu -3'
miRNA:   3'- gGGGCuuUuuUUGUGGUCG---UGgCGGu -5'
29612 3' -51.2 NC_006151.1 + 2525 0.66 0.985646
Target:  5'- uCCCCGAGcccGAGCGCgGaGCGCUggcggGCCAu -3'
miRNA:   3'- -GGGGCUUuu-UUUGUGgU-CGUGG-----CGGU- -5'
29612 3' -51.2 NC_006151.1 + 2749 0.71 0.894857
Target:  5'- gCCCaCGAu-GGAGCuagaguCCAGCACgGCCGc -3'
miRNA:   3'- -GGG-GCUuuUUUUGu-----GGUCGUGgCGGU- -5'
29612 3' -51.2 NC_006151.1 + 3566 0.67 0.981799
Target:  5'- gUCCGAGGGAGcggcgcuuGCGCCGGgGCCcCCGg -3'
miRNA:   3'- gGGGCUUUUUU--------UGUGGUCgUGGcGGU- -5'
29612 3' -51.2 NC_006151.1 + 3691 0.67 0.979607
Target:  5'- gCCCCGGGcgcgcGGCGCUucuucuuGCGCCGCUc -3'
miRNA:   3'- -GGGGCUUuuu--UUGUGGu------CGUGGCGGu -5'
29612 3' -51.2 NC_006151.1 + 3864 0.77 0.570983
Target:  5'- -gCCGGAGGGGGCGCCcGcCGCCGCCGg -3'
miRNA:   3'- ggGGCUUUUUUUGUGGuC-GUGGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 4059 0.76 0.663881
Target:  5'- gCCCCGuccacgcuguAGcGCACCAGCGgCGCCAc -3'
miRNA:   3'- -GGGGCuuu-------UUuUGUGGUCGUgGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 4149 0.76 0.665991
Target:  5'- gCCCCGggGAucgcgucgcgGAGCGCgagCAGCGCgGCCGu -3'
miRNA:   3'- -GGGGCuuUU----------UUUGUG---GUCGUGgCGGU- -5'
29612 3' -51.2 NC_006151.1 + 4270 0.67 0.978201
Target:  5'- gCUCGAGGAcgccgcggcaggccaGGACGCaGGCGuCCGCCAg -3'
miRNA:   3'- gGGGCUUUU---------------UUUGUGgUCGU-GGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 4557 0.67 0.979607
Target:  5'- uCCCCGAugugcGGCAgCGGCggggucacGCUGCCGg -3'
miRNA:   3'- -GGGGCUuuuu-UUGUgGUCG--------UGGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 4848 0.75 0.718151
Target:  5'- cCCUCGcgGGAGuCcCCGGCGCCGCCGu -3'
miRNA:   3'- -GGGGCuuUUUUuGuGGUCGUGGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 4920 0.72 0.857787
Target:  5'- uCCCCGAGcgggguGAGCAgCGGC-CCGUCGg -3'
miRNA:   3'- -GGGGCUUuu----UUUGUgGUCGuGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.