Results 1 - 20 of 453 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29612 | 3' | -51.2 | NC_006151.1 | + | 107539 | 0.83 | 0.300057 |
Target: 5'- gCCCCGGcggcccCGCCGGCGCCGCCGc -3' miRNA: 3'- -GGGGCUuuuuuuGUGGUCGUGGCGGU- -5' |
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29612 | 3' | -51.2 | NC_006151.1 | + | 102906 | 0.66 | 0.99256 |
Target: 5'- gCCUCGucGAcu-CGCUGGCGgCCGCCGa -3' miRNA: 3'- -GGGGCuuUUuuuGUGGUCGU-GGCGGU- -5' |
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29612 | 3' | -51.2 | NC_006151.1 | + | 83356 | 0.66 | 0.99256 |
Target: 5'- uCCCCGGcgcgcGCGCgGGCGCgcaggCGCCGc -3' miRNA: 3'- -GGGGCUuuuuuUGUGgUCGUG-----GCGGU- -5' |
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29612 | 3' | -51.2 | NC_006151.1 | + | 68845 | 0.66 | 0.99256 |
Target: 5'- gCUCGAGGcgccgcgcGAcGCGuCCAGCAgCGCCGg -3' miRNA: 3'- gGGGCUUU--------UUuUGU-GGUCGUgGCGGU- -5' |
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29612 | 3' | -51.2 | NC_006151.1 | + | 65113 | 0.66 | 0.99256 |
Target: 5'- gCCCC-AGGAGGACGCCcgucggcgGGCuCCGCg- -3' miRNA: 3'- -GGGGcUUUUUUUGUGG--------UCGuGGCGgu -5' |
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29612 | 3' | -51.2 | NC_006151.1 | + | 65816 | 0.66 | 0.99256 |
Target: 5'- gCCgCGguGGAugggcggccGCGCCAGCGCgGCCc -3' miRNA: 3'- -GGgGCuuUUUu--------UGUGGUCGUGgCGGu -5' |
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29612 | 3' | -51.2 | NC_006151.1 | + | 54408 | 0.66 | 0.99256 |
Target: 5'- gCCUCGGcgccGAGGCGCUGGCGCgGCg- -3' miRNA: 3'- -GGGGCUuu--UUUUGUGGUCGUGgCGgu -5' |
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29612 | 3' | -51.2 | NC_006151.1 | + | 10693 | 0.66 | 0.992454 |
Target: 5'- cCCCCGugaucacguucgcGCACC-GCGgCGCCAg -3' miRNA: 3'- -GGGGCuuuuuu-------UGUGGuCGUgGCGGU- -5' |
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29612 | 3' | -51.2 | NC_006151.1 | + | 125904 | 0.66 | 0.992454 |
Target: 5'- cUCCUGGAcuacagcGAGAu--CCAGCGCCGCa- -3' miRNA: 3'- -GGGGCUU-------UUUUuguGGUCGUGGCGgu -5' |
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29612 | 3' | -51.2 | NC_006151.1 | + | 111242 | 0.66 | 0.99256 |
Target: 5'- gCCCCaGGAGGGuguGCAgCAGCGagGCCGg -3' miRNA: 3'- -GGGG-CUUUUUu--UGUgGUCGUggCGGU- -5' |
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29612 | 3' | -51.2 | NC_006151.1 | + | 112585 | 0.66 | 0.99256 |
Target: 5'- gCCCgCGGGcuucguGGAGGcCGCCgcGGCGCCGCUg -3' miRNA: 3'- -GGG-GCUU------UUUUU-GUGG--UCGUGGCGGu -5' |
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29612 | 3' | -51.2 | NC_006151.1 | + | 130583 | 0.66 | 0.99256 |
Target: 5'- aUCUGGAGGuggugcagcGGCACCAGCGCCucCCAg -3' miRNA: 3'- gGGGCUUUUu--------UUGUGGUCGUGGc-GGU- -5' |
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29612 | 3' | -51.2 | NC_006151.1 | + | 113101 | 0.66 | 0.99256 |
Target: 5'- gCCaCCGggGGcggggccgcGGACGCgGaCGCCGCCGg -3' miRNA: 3'- -GG-GGCuuUU---------UUUGUGgUcGUGGCGGU- -5' |
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29612 | 3' | -51.2 | NC_006151.1 | + | 108380 | 0.66 | 0.99256 |
Target: 5'- -gCCGAAG-----GCCGguGCACCGCCGg -3' miRNA: 3'- ggGGCUUUuuuugUGGU--CGUGGCGGU- -5' |
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29612 | 3' | -51.2 | NC_006151.1 | + | 85151 | 0.66 | 0.99256 |
Target: 5'- aCCgCGugcggcAGGGgGCCGGCGCCGCgGg -3' miRNA: 3'- -GGgGCuuu---UUUUgUGGUCGUGGCGgU- -5' |
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29612 | 3' | -51.2 | NC_006151.1 | + | 68635 | 0.66 | 0.99256 |
Target: 5'- gCCCGcgcgu--CGCCGGCuccACUGCCAc -3' miRNA: 3'- gGGGCuuuuuuuGUGGUCG---UGGCGGU- -5' |
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29612 | 3' | -51.2 | NC_006151.1 | + | 64493 | 0.66 | 0.99256 |
Target: 5'- gCCCGc---GGGCGCgGGCggcgggcgcgcGCCGCCAa -3' miRNA: 3'- gGGGCuuuuUUUGUGgUCG-----------UGGCGGU- -5' |
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29612 | 3' | -51.2 | NC_006151.1 | + | 63775 | 0.66 | 0.99256 |
Target: 5'- cCCCCGcgucgccaggcGGGGucggccguCGCCAGCGCCucGCCGg -3' miRNA: 3'- -GGGGC-----------UUUUuuu-----GUGGUCGUGG--CGGU- -5' |
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29612 | 3' | -51.2 | NC_006151.1 | + | 54675 | 0.66 | 0.99256 |
Target: 5'- aCCUGGcc-GGGCACCuGCGCguCGCCGg -3' miRNA: 3'- gGGGCUuuuUUUGUGGuCGUG--GCGGU- -5' |
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29612 | 3' | -51.2 | NC_006151.1 | + | 8323 | 0.66 | 0.99256 |
Target: 5'- cCCCCGggGc--GCGCgGGCcucgaucgcgcCCGCCGg -3' miRNA: 3'- -GGGGCuuUuuuUGUGgUCGu----------GGCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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