Results 1 - 20 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29614 | 3' | -51.5 | NC_006151.1 | + | 37567 | 0.66 | 0.984836 |
Target: 5'- gGgGCCGCCGgCGAGgccauguccugGCUGCAGa--- -3' miRNA: 3'- -CgCGGCGGCgGUUUa----------UGAUGUCaucu -5' |
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29614 | 3' | -51.5 | NC_006151.1 | + | 5699 | 0.66 | 0.986586 |
Target: 5'- gGCGCUGCgGCCAcc-GCUGCuggcugugcuGGUGGc -3' miRNA: 3'- -CGCGGCGgCGGUuuaUGAUG----------UCAUCu -5' |
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29614 | 3' | -51.5 | NC_006151.1 | + | 77842 | 0.66 | 0.986586 |
Target: 5'- -aGCCGCUG-CAGGUGCUgACGGaGGGg -3' miRNA: 3'- cgCGGCGGCgGUUUAUGA-UGUCaUCU- -5' |
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29614 | 3' | -51.5 | NC_006151.1 | + | 23755 | 0.66 | 0.986586 |
Target: 5'- -gGCCGCCGUCAAAgaac-CAGgcGAc -3' miRNA: 3'- cgCGGCGGCGGUUUaugauGUCauCU- -5' |
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29614 | 3' | -51.5 | NC_006151.1 | + | 11928 | 0.66 | 0.986249 |
Target: 5'- cGCGCCGCCGCCGccuccucauCUuucGUGGu -3' miRNA: 3'- -CGCGGCGGCGGUuuau-----GAuguCAUCu -5' |
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29614 | 3' | -51.5 | NC_006151.1 | + | 103262 | 0.66 | 0.984836 |
Target: 5'- cGCGCCauggGCgGCCAcGUGCUGagcCAGgAGAc -3' miRNA: 3'- -CGCGG----CGgCGGUuUAUGAU---GUCaUCU- -5' |
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29614 | 3' | -51.5 | NC_006151.1 | + | 89719 | 0.66 | 0.984836 |
Target: 5'- gGCGgCGCCgGCCGcg-GCcGCGGUGGu -3' miRNA: 3'- -CGCgGCGG-CGGUuuaUGaUGUCAUCu -5' |
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29614 | 3' | -51.5 | NC_006151.1 | + | 55593 | 0.66 | 0.984836 |
Target: 5'- cGUGCCGCCGUaCGAGUcggAC-GUGGAg -3' miRNA: 3'- -CGCGGCGGCG-GUUUAugaUGuCAUCU- -5' |
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29614 | 3' | -51.5 | NC_006151.1 | + | 15918 | 0.66 | 0.984836 |
Target: 5'- cCGCCGCCGCCccGUGagGCGGg--- -3' miRNA: 3'- cGCGGCGGCGGuuUAUgaUGUCaucu -5' |
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29614 | 3' | -51.5 | NC_006151.1 | + | 56353 | 0.66 | 0.986586 |
Target: 5'- cGCGCC-CCGCCGgcgcgGAaGCUACGGc--- -3' miRNA: 3'- -CGCGGcGGCGGU-----UUaUGAUGUCaucu -5' |
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29614 | 3' | -51.5 | NC_006151.1 | + | 81887 | 0.66 | 0.986586 |
Target: 5'- aGCGCCGgCGCCGAGgcGCgcCGGUc-- -3' miRNA: 3'- -CGCGGCgGCGGUUUa-UGauGUCAucu -5' |
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29614 | 3' | -51.5 | NC_006151.1 | + | 130640 | 0.66 | 0.986586 |
Target: 5'- aGCGCCGCCgagGCCGc---CUGCGGcguGAa -3' miRNA: 3'- -CGCGGCGG---CGGUuuauGAUGUCau-CU- -5' |
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29614 | 3' | -51.5 | NC_006151.1 | + | 17328 | 0.66 | 0.989617 |
Target: 5'- gGCGCCG-CGUCAGcucGUGCgucuCGGUGGu -3' miRNA: 3'- -CGCGGCgGCGGUU---UAUGau--GUCAUCu -5' |
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29614 | 3' | -51.5 | NC_006151.1 | + | 17110 | 0.66 | 0.989617 |
Target: 5'- gGCGCCGggggcuCCGgCGgcGGUGCUGCGGgAGGc -3' miRNA: 3'- -CGCGGC------GGCgGU--UUAUGAUGUCaUCU- -5' |
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29614 | 3' | -51.5 | NC_006151.1 | + | 79685 | 0.66 | 0.989617 |
Target: 5'- uCGCCGCCGCgGGG-ACcGCAGccGAa -3' miRNA: 3'- cGCGGCGGCGgUUUaUGaUGUCauCU- -5' |
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29614 | 3' | -51.5 | NC_006151.1 | + | 57113 | 0.66 | 0.989617 |
Target: 5'- aGCGCgCGCCGCCGcgcccgGCGGUc-- -3' miRNA: 3'- -CGCG-GCGGCGGUuuaugaUGUCAucu -5' |
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29614 | 3' | -51.5 | NC_006151.1 | + | 23543 | 0.66 | 0.98948 |
Target: 5'- gGCGUCGUCGCCAAAgACgagcacgacgaugUACAGg--- -3' miRNA: 3'- -CGCGGCGGCGGUUUaUG-------------AUGUCaucu -5' |
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29614 | 3' | -51.5 | NC_006151.1 | + | 59930 | 0.66 | 0.988177 |
Target: 5'- gGCGCgCGCCGUCAGcgGCggcucGCAGc--- -3' miRNA: 3'- -CGCG-GCGGCGGUUuaUGa----UGUCaucu -5' |
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29614 | 3' | -51.5 | NC_006151.1 | + | 57309 | 0.66 | 0.988177 |
Target: 5'- gGCGgCGCgGCCGAAgccGCUGCGcgacgGGAa -3' miRNA: 3'- -CGCgGCGgCGGUUUa--UGAUGUca---UCU- -5' |
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29614 | 3' | -51.5 | NC_006151.1 | + | 54692 | 0.66 | 0.988177 |
Target: 5'- cGCGUCGCCGgCAGcGUGCUGggcCAGggccUGGAc -3' miRNA: 3'- -CGCGGCGGCgGUU-UAUGAU---GUC----AUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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