miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29614 3' -51.5 NC_006151.1 + 1858 0.7 0.898246
Target:  5'- -gGCCGCCGCCGcggAC-GCAGaGGAg -3'
miRNA:   3'- cgCGGCGGCGGUuuaUGaUGUCaUCU- -5'
29614 3' -51.5 NC_006151.1 + 3878 0.68 0.96404
Target:  5'- cCGCCGCCGCCG---GCgccgGCGcUGGGa -3'
miRNA:   3'- cGCGGCGGCGGUuuaUGa---UGUcAUCU- -5'
29614 3' -51.5 NC_006151.1 + 5626 0.71 0.885052
Target:  5'- gGCGCCGCCGCCGccggGCgccgagaccggcccgGCGGcGGGg -3'
miRNA:   3'- -CGCGGCGGCGGUuua-UGa--------------UGUCaUCU- -5'
29614 3' -51.5 NC_006151.1 + 5699 0.66 0.986586
Target:  5'- gGCGCUGCgGCCAcc-GCUGCuggcugugcuGGUGGc -3'
miRNA:   3'- -CGCGGCGgCGGUuuaUGAUG----------UCAUCu -5'
29614 3' -51.5 NC_006151.1 + 11314 0.67 0.97606
Target:  5'- cGgGCCGCCGC--GAUACcgcGCGGgcGAu -3'
miRNA:   3'- -CgCGGCGGCGguUUAUGa--UGUCauCU- -5'
29614 3' -51.5 NC_006151.1 + 11928 0.66 0.986249
Target:  5'- cGCGCCGCCGCCGccuccucauCUuucGUGGu -3'
miRNA:   3'- -CGCGGCGGCGGUuuau-----GAuguCAUCu -5'
29614 3' -51.5 NC_006151.1 + 15918 0.66 0.984836
Target:  5'- cCGCCGCCGCCccGUGagGCGGg--- -3'
miRNA:   3'- cGCGGCGGCGGuuUAUgaUGUCaucu -5'
29614 3' -51.5 NC_006151.1 + 17110 0.66 0.989617
Target:  5'- gGCGCCGggggcuCCGgCGgcGGUGCUGCGGgAGGc -3'
miRNA:   3'- -CGCGGC------GGCgGU--UUAUGAUGUCaUCU- -5'
29614 3' -51.5 NC_006151.1 + 17328 0.66 0.989617
Target:  5'- gGCGCCG-CGUCAGcucGUGCgucuCGGUGGu -3'
miRNA:   3'- -CGCGGCgGCGGUU---UAUGau--GUCAUCu -5'
29614 3' -51.5 NC_006151.1 + 18744 0.67 0.970486
Target:  5'- uCGCCGCCGCCGGGgccCcACGGg--- -3'
miRNA:   3'- cGCGGCGGCGGUUUau-GaUGUCaucu -5'
29614 3' -51.5 NC_006151.1 + 23543 0.66 0.98948
Target:  5'- gGCGUCGUCGCCAAAgACgagcacgacgaugUACAGg--- -3'
miRNA:   3'- -CGCGGCGGCGGUUUaUG-------------AUGUCaucu -5'
29614 3' -51.5 NC_006151.1 + 23755 0.66 0.986586
Target:  5'- -gGCCGCCGUCAAAgaac-CAGgcGAc -3'
miRNA:   3'- cgCGGCGGCGGUUUaugauGUCauCU- -5'
29614 3' -51.5 NC_006151.1 + 35147 0.73 0.792037
Target:  5'- cGCGCCGCgGCCAAGaugGCcGCAGa--- -3'
miRNA:   3'- -CGCGGCGgCGGUUUa--UGaUGUCaucu -5'
29614 3' -51.5 NC_006151.1 + 35246 0.67 0.97606
Target:  5'- -gGCCGCCGCgGGGgccggACaUGCAaaGUAGAc -3'
miRNA:   3'- cgCGGCGGCGgUUUa----UG-AUGU--CAUCU- -5'
29614 3' -51.5 NC_006151.1 + 37567 0.66 0.984836
Target:  5'- gGgGCCGCCGgCGAGgccauguccugGCUGCAGa--- -3'
miRNA:   3'- -CgCGGCGGCgGUUUa----------UGAUGUCaucu -5'
29614 3' -51.5 NC_006151.1 + 38186 0.69 0.928629
Target:  5'- cGUGgCGCCGCUGGugcGCUACAgcGUGGAc -3'
miRNA:   3'- -CGCgGCGGCGGUUua-UGAUGU--CAUCU- -5'
29614 3' -51.5 NC_006151.1 + 38381 0.72 0.83702
Target:  5'- aGCGCCGgCGCCGGcgGCgGCGGgcGc -3'
miRNA:   3'- -CGCGGCgGCGGUUuaUGaUGUCauCu -5'
29614 3' -51.5 NC_006151.1 + 39018 0.68 0.960473
Target:  5'- cGCuCCGCCGCCGcgccgccugGAUGCgGCAGaUAGc -3'
miRNA:   3'- -CGcGGCGGCGGU---------UUAUGaUGUC-AUCu -5'
29614 3' -51.5 NC_006151.1 + 39594 0.68 0.956668
Target:  5'- uGCGCCucuGCCGCCAGgacaacGUGCgcuacACGGUGa- -3'
miRNA:   3'- -CGCGG---CGGCGGUU------UAUGa----UGUCAUcu -5'
29614 3' -51.5 NC_006151.1 + 39674 0.69 0.933937
Target:  5'- cGCGCCuaCCGCCAGcgcGUGCUccccACcGUGGAc -3'
miRNA:   3'- -CGCGGc-GGCGGUU---UAUGA----UGuCAUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.