miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29614 3' -51.5 NC_006151.1 + 112239 0.86 0.203224
Target:  5'- uCGCCGCCGCCAGGcGCUGCGuGUGGGc -3'
miRNA:   3'- cGCGGCGGCGGUUUaUGAUGU-CAUCU- -5'
29614 3' -51.5 NC_006151.1 + 40036 0.82 0.317435
Target:  5'- cGCGCCGCCGCCGGggGC-GCcGUGGAg -3'
miRNA:   3'- -CGCGGCGGCGGUUuaUGaUGuCAUCU- -5'
29614 3' -51.5 NC_006151.1 + 76870 0.8 0.420847
Target:  5'- cGCGCCGCCGCCAGGagccccagcgccgccUGCUGCGccGgcGAg -3'
miRNA:   3'- -CGCGGCGGCGGUUU---------------AUGAUGU--CauCU- -5'
29614 3' -51.5 NC_006151.1 + 56574 0.78 0.533888
Target:  5'- cGCGCCGCCGCCcGAcggGCUGguGcGGAc -3'
miRNA:   3'- -CGCGGCGGCGGuUUa--UGAUguCaUCU- -5'
29614 3' -51.5 NC_006151.1 + 52447 0.77 0.566021
Target:  5'- aGCGCCGCCGCCGugacggcggccagGCgcCGGUAGGc -3'
miRNA:   3'- -CGCGGCGGCGGUuua----------UGauGUCAUCU- -5'
29614 3' -51.5 NC_006151.1 + 130426 0.77 0.575448
Target:  5'- cGCGCCGaCCGUCGAggACUGCAGcGGc -3'
miRNA:   3'- -CGCGGC-GGCGGUUuaUGAUGUCaUCu -5'
29614 3' -51.5 NC_006151.1 + 117556 0.76 0.617696
Target:  5'- cGCGCCGCgGCCAGAaggGCUccccGCGGaGGAu -3'
miRNA:   3'- -CGCGGCGgCGGUUUa--UGA----UGUCaUCU- -5'
29614 3' -51.5 NC_006151.1 + 114133 0.76 0.628308
Target:  5'- uGCGCCGCCGCCGAGccgcgGCU-CGGgcGc -3'
miRNA:   3'- -CGCGGCGGCGGUUUa----UGAuGUCauCu -5'
29614 3' -51.5 NC_006151.1 + 85623 0.76 0.638923
Target:  5'- cGCGCCGCCGCCGcgcgGCgcCAGcGGGg -3'
miRNA:   3'- -CGCGGCGGCGGUuua-UGauGUCaUCU- -5'
29614 3' -51.5 NC_006151.1 + 104422 0.76 0.643168
Target:  5'- cGCGCCGCCGCCGgcauggggcgcuucaGcUACUACGacgccGUGGGc -3'
miRNA:   3'- -CGCGGCGGCGGU---------------UuAUGAUGU-----CAUCU- -5'
29614 3' -51.5 NC_006151.1 + 123198 0.75 0.649532
Target:  5'- cGCGCUGCUGCaCAcGUACgugGCGGUGGc -3'
miRNA:   3'- -CGCGGCGGCG-GUuUAUGa--UGUCAUCu -5'
29614 3' -51.5 NC_006151.1 + 65795 0.75 0.670697
Target:  5'- gGCGCCGCCcgGCgCGGacGUGCcGCGGUGGAu -3'
miRNA:   3'- -CGCGGCGG--CG-GUU--UAUGaUGUCAUCU- -5'
29614 3' -51.5 NC_006151.1 + 93455 0.75 0.670697
Target:  5'- uCGCCGCCGCgGGGcGCUACAGg--- -3'
miRNA:   3'- cGCGGCGGCGgUUUaUGAUGUCaucu -5'
29614 3' -51.5 NC_006151.1 + 95679 0.75 0.691726
Target:  5'- cGCGCuCGCCGuCCAGGUGCcGCuGGUAGc -3'
miRNA:   3'- -CGCG-GCGGC-GGUUUAUGaUG-UCAUCu -5'
29614 3' -51.5 NC_006151.1 + 69216 0.74 0.702165
Target:  5'- cGCGCCgGCCGCCccag---GCGGUGGAg -3'
miRNA:   3'- -CGCGG-CGGCGGuuuaugaUGUCAUCU- -5'
29614 3' -51.5 NC_006151.1 + 58139 0.74 0.743187
Target:  5'- cGCGCCGUacgcgGCCGcGUGCcaccgGCGGUAGAg -3'
miRNA:   3'- -CGCGGCGg----CGGUuUAUGa----UGUCAUCU- -5'
29614 3' -51.5 NC_006151.1 + 132334 0.73 0.753207
Target:  5'- cGCGCCGUgGCCAcGUACaggUGCAGgaAGAg -3'
miRNA:   3'- -CGCGGCGgCGGUuUAUG---AUGUCa-UCU- -5'
29614 3' -51.5 NC_006151.1 + 52587 0.73 0.763112
Target:  5'- gGCGCUGCCGCC-----CUGCGcGUGGAc -3'
miRNA:   3'- -CGCGGCGGCGGuuuauGAUGU-CAUCU- -5'
29614 3' -51.5 NC_006151.1 + 103918 0.73 0.763112
Target:  5'- cGCGCgGCCGCCGuggagGAgccgcaGCUGCAGaAGAu -3'
miRNA:   3'- -CGCGgCGGCGGU-----UUa-----UGAUGUCaUCU- -5'
29614 3' -51.5 NC_006151.1 + 98290 0.73 0.763112
Target:  5'- aCGCCGUCGCCAcGGUGgUGCAGUcgcgcauccuGGAg -3'
miRNA:   3'- cGCGGCGGCGGU-UUAUgAUGUCA----------UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.