miRNA display CGI


Results 21 - 40 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29615 3' -62.2 NC_006151.1 + 108678 0.73 0.257712
Target:  5'- gCAGCCGgagcggcgGCCCGAgcaccuccugGAGCCCCcGGGAGUg -3'
miRNA:   3'- -GUCGGC--------UGGGCU----------CUCGGGG-CUCUCGg -5'
29615 3' -62.2 NC_006151.1 + 5850 0.73 0.26008
Target:  5'- aGGCUGcggagggggacgagcGCCCG-GGGCCgCCGGGGGCCc -3'
miRNA:   3'- gUCGGC---------------UGGGCuCUCGG-GGCUCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 101185 0.73 0.27591
Target:  5'- aCGGCCGACgCCGuGGAcgcguGCCUgcgCGAGGGCCa -3'
miRNA:   3'- -GUCGGCUG-GGC-UCU-----CGGG---GCUCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 109969 0.73 0.2822
Target:  5'- uGGCCcACCCGGGAGgacuugaCCCGcGAGCCc -3'
miRNA:   3'- gUCGGcUGGGCUCUCg------GGGCuCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 37228 0.73 0.2822
Target:  5'- gCGGCCucCCCGGccccGGCCCCG-GAGCCc -3'
miRNA:   3'- -GUCGGcuGGGCUc---UCGGGGCuCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 36384 0.73 0.2822
Target:  5'- aGGCCGGggccCCCGGcGGCCCCGGGcGCUc -3'
miRNA:   3'- gUCGGCU----GGGCUcUCGGGGCUCuCGG- -5'
29615 3' -62.2 NC_006151.1 + 3625 0.72 0.288604
Target:  5'- uGGCCGuCCCcgcgGAGGGCCgcgCCGgAGAGCCc -3'
miRNA:   3'- gUCGGCuGGG----CUCUCGG---GGC-UCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 141777 0.72 0.291197
Target:  5'- -cGCCGGuucuguCCCGGGGacgcgggucggucccGCCCCGAGGGCa -3'
miRNA:   3'- guCGGCU------GGGCUCU---------------CGGGGCUCUCGg -5'
29615 3' -62.2 NC_006151.1 + 5939 0.72 0.295121
Target:  5'- gAGCCGGCCCGGGAccggGgCCCGAGGa-- -3'
miRNA:   3'- gUCGGCUGGGCUCU----CgGGGCUCUcgg -5'
29615 3' -62.2 NC_006151.1 + 36333 0.72 0.295121
Target:  5'- gGGCCGGCUCc-GGGCCCCGGccGCCg -3'
miRNA:   3'- gUCGGCUGGGcuCUCGGGGCUcuCGG- -5'
29615 3' -62.2 NC_006151.1 + 127400 0.72 0.295121
Target:  5'- gCGGCCGAgUCGAcggGAGCCCgCGGGGucGCCu -3'
miRNA:   3'- -GUCGGCUgGGCU---CUCGGG-GCUCU--CGG- -5'
29615 3' -62.2 NC_006151.1 + 11036 0.72 0.295121
Target:  5'- gGGCCGGCcggCCGGGGGCCCggccuggaCGcGGGCCa -3'
miRNA:   3'- gUCGGCUG---GGCUCUCGGG--------GCuCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 46365 0.72 0.301083
Target:  5'- gCAGUgGAUgCGGcggaugcagaggcGAGCCCCGAuGAGCCa -3'
miRNA:   3'- -GUCGgCUGgGCU-------------CUCGGGGCU-CUCGG- -5'
29615 3' -62.2 NC_006151.1 + 45293 0.72 0.301752
Target:  5'- gCGGUCGuCCCGAGGaCCCgCGAG-GCCg -3'
miRNA:   3'- -GUCGGCuGGGCUCUcGGG-GCUCuCGG- -5'
29615 3' -62.2 NC_006151.1 + 3471 0.72 0.308497
Target:  5'- gGGCaugGGCCCGAGcgGGCgCCG-GAGCCg -3'
miRNA:   3'- gUCGg--CUGGGCUC--UCGgGGCuCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 8186 0.72 0.308497
Target:  5'- gGGCCGGgacCCCGGGGGCgCUccgggagacgaaGAGGGCCg -3'
miRNA:   3'- gUCGGCU---GGGCUCUCGgGG------------CUCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 125078 0.72 0.314666
Target:  5'- uGGCCGgcgacagGCCCGAGGuguaccucGCCCgCGGGGGCUu -3'
miRNA:   3'- gUCGGC-------UGGGCUCU--------CGGG-GCUCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 1838 0.72 0.315357
Target:  5'- -cGCCGGgCCGAGGGgaCCGAG-GCCg -3'
miRNA:   3'- guCGGCUgGGCUCUCggGGCUCuCGG- -5'
29615 3' -62.2 NC_006151.1 + 28236 0.72 0.322331
Target:  5'- gGGCCGGgCCGAcGGGCCCauuggccGGGGCCu -3'
miRNA:   3'- gUCGGCUgGGCU-CUCGGGgc-----UCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 12026 0.72 0.322331
Target:  5'- -cGCCGgcgcaACCCc-GGGCCCUGAGAGCUu -3'
miRNA:   3'- guCGGC-----UGGGcuCUCGGGGCUCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.