miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29615 3' -62.2 NC_006151.1 + 132856 0.8 0.088062
Target:  5'- gCGGCCGGCCCGGGGccgcGCCCCccagcAGGGCCu -3'
miRNA:   3'- -GUCGGCUGGGCUCU----CGGGGc----UCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 101771 0.79 0.113396
Target:  5'- -cGCCGACgCG-GGGCCCCG-GGGCCa -3'
miRNA:   3'- guCGGCUGgGCuCUCGGGGCuCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 39862 0.77 0.138412
Target:  5'- -cGCCGAgcUCCGc-GGCCCCGAGGGCCu -3'
miRNA:   3'- guCGGCU--GGGCucUCGGGGCUCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 2177 0.77 0.160399
Target:  5'- gGGCCGgccccggcGCCCGAGGcCCCCGcGGGCCg -3'
miRNA:   3'- gUCGGC--------UGGGCUCUcGGGGCuCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 81353 0.76 0.163957
Target:  5'- -cGCCGcGCCCG-GGGCCCCGGcgggcgccagcgcGAGCCg -3'
miRNA:   3'- guCGGC-UGGGCuCUCGGGGCU-------------CUCGG- -5'
29615 3' -62.2 NC_006151.1 + 6229 0.76 0.164356
Target:  5'- gAGCCGcgGCgCCGGGAGCCCUGgcugccgccgucGGGGCCg -3'
miRNA:   3'- gUCGGC--UG-GGCUCUCGGGGC------------UCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 28557 0.76 0.164356
Target:  5'- gAGCCGuGCCCGc--GUCCCGGGAGCCc -3'
miRNA:   3'- gUCGGC-UGGGCucuCGGGGCUCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 82399 0.76 0.172536
Target:  5'- gAGCUccgcGCCCGAGggcGGCCCCGAGAGgCg -3'
miRNA:   3'- gUCGGc---UGGGCUC---UCGGGGCUCUCgG- -5'
29615 3' -62.2 NC_006151.1 + 130265 0.76 0.17676
Target:  5'- aGGCCGGCgCGc-GGCCCCGAG-GCCg -3'
miRNA:   3'- gUCGGCUGgGCucUCGGGGCUCuCGG- -5'
29615 3' -62.2 NC_006151.1 + 130714 0.75 0.18999
Target:  5'- gGGgCGGCCCGGGGGCCCgCGc-GGCCg -3'
miRNA:   3'- gUCgGCUGGGCUCUCGGG-GCucUCGG- -5'
29615 3' -62.2 NC_006151.1 + 107720 0.75 0.199286
Target:  5'- aGGCCGccgcgGCCCccaagcAGcAGCCCCGGGAGCCc -3'
miRNA:   3'- gUCGGC-----UGGGc-----UC-UCGGGGCUCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 40067 0.75 0.208976
Target:  5'- --aCCGGCCCGcgGGGGCCUCGGGcGCCg -3'
miRNA:   3'- gucGGCUGGGC--UCUCGGGGCUCuCGG- -5'
29615 3' -62.2 NC_006151.1 + 21554 0.75 0.213972
Target:  5'- gGGCCugGGCCuCGGcGAGCCcgCCGAGGGCCg -3'
miRNA:   3'- gUCGG--CUGG-GCU-CUCGG--GGCUCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 81827 0.75 0.213972
Target:  5'- gCAGCCGGCCCGcgcauGAGCaggCgCGAGAGCa -3'
miRNA:   3'- -GUCGGCUGGGCu----CUCGg--G-GCUCUCGg -5'
29615 3' -62.2 NC_006151.1 + 39473 0.74 0.224271
Target:  5'- -cGCUGGCCCGGGuGCCgCGAGcuccgcgcGGCCg -3'
miRNA:   3'- guCGGCUGGGCUCuCGGgGCUC--------UCGG- -5'
29615 3' -62.2 NC_006151.1 + 2003 0.74 0.224271
Target:  5'- cCGGCCGGgCCGAGGgggcGCCCCGcucagcGGAGCa -3'
miRNA:   3'- -GUCGGCUgGGCUCU----CGGGGC------UCUCGg -5'
29615 3' -62.2 NC_006151.1 + 76225 0.74 0.240507
Target:  5'- -uGCCGucgagguucucGCCCGAGAuGagCCCGAGGGCCu -3'
miRNA:   3'- guCGGC-----------UGGGCUCU-Cg-GGGCUCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 35230 0.73 0.251868
Target:  5'- cCGGgCGAgCCGAGAuggccGCCgCGGGGGCCg -3'
miRNA:   3'- -GUCgGCUgGGCUCU-----CGGgGCUCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 3957 0.73 0.257712
Target:  5'- -cGCgGGCCCGGGccgcgcggcGGCCUCGGcGAGCCg -3'
miRNA:   3'- guCGgCUGGGCUC---------UCGGGGCU-CUCGG- -5'
29615 3' -62.2 NC_006151.1 + 108678 0.73 0.257712
Target:  5'- gCAGCCGgagcggcgGCCCGAgcaccuccugGAGCCCCcGGGAGUg -3'
miRNA:   3'- -GUCGGC--------UGGGCU----------CUCGGGG-CUCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.