Results 1 - 20 of 232 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29615 | 3' | -62.2 | NC_006151.1 | + | 117922 | 0.66 | 0.638044 |
Target: 5'- -cGCCgGACCCGuccGCCCgGAGAGg- -3' miRNA: 3'- guCGG-CUGGGCucuCGGGgCUCUCgg -5' |
|||||||
29615 | 3' | -62.2 | NC_006151.1 | + | 64816 | 0.66 | 0.656665 |
Target: 5'- aAGCCGGCggccagcuccuccUCGAGGauGUCCCcggcGAGGGCCu -3' miRNA: 3'- gUCGGCUG-------------GGCUCU--CGGGG----CUCUCGG- -5' |
|||||||
29615 | 3' | -62.2 | NC_006151.1 | + | 96409 | 0.66 | 0.64785 |
Target: 5'- gCGGCCGccACCgCGGggaucagcgcGAGCUCCGGcgaggcGAGCCa -3' miRNA: 3'- -GUCGGC--UGG-GCU----------CUCGGGGCU------CUCGG- -5' |
|||||||
29615 | 3' | -62.2 | NC_006151.1 | + | 13686 | 0.66 | 0.64785 |
Target: 5'- -cGCCGGCCaauGcGGGCuCCCGGGAcGCg -3' miRNA: 3'- guCGGCUGGg--CuCUCG-GGGCUCU-CGg -5' |
|||||||
29615 | 3' | -62.2 | NC_006151.1 | + | 89131 | 0.66 | 0.64785 |
Target: 5'- gCGGCgGGaCCGGGGGCgUCGAGAccgcGCCc -3' miRNA: 3'- -GUCGgCUgGGCUCUCGgGGCUCU----CGG- -5' |
|||||||
29615 | 3' | -62.2 | NC_006151.1 | + | 78131 | 0.66 | 0.64785 |
Target: 5'- gCGGCgGGCCgCGGGcGCCUCGGacGAcGCCu -3' miRNA: 3'- -GUCGgCUGG-GCUCuCGGGGCU--CU-CGG- -5' |
|||||||
29615 | 3' | -62.2 | NC_006151.1 | + | 51214 | 0.66 | 0.64785 |
Target: 5'- aGGCCG-CCCGcGGGCCCgCGcAG-GCg -3' miRNA: 3'- gUCGGCuGGGCuCUCGGG-GC-UCuCGg -5' |
|||||||
29615 | 3' | -62.2 | NC_006151.1 | + | 41126 | 0.66 | 0.64785 |
Target: 5'- gUAGauGGuCCCGAGGGUCCCGGuGGUCc -3' miRNA: 3'- -GUCggCU-GGGCUCUCGGGGCUcUCGG- -5' |
|||||||
29615 | 3' | -62.2 | NC_006151.1 | + | 32871 | 0.66 | 0.64785 |
Target: 5'- aGGcCCGACCCGcgcggGGGGCCCCcuccuGucGCCu -3' miRNA: 3'- gUC-GGCUGGGC-----UCUCGGGGcu---Cu-CGG- -5' |
|||||||
29615 | 3' | -62.2 | NC_006151.1 | + | 14645 | 0.66 | 0.657644 |
Target: 5'- gCGGCCgGGCUCGGGuccGGUUCCGggucggcgucggGGAGCCu -3' miRNA: 3'- -GUCGG-CUGGGCUC---UCGGGGC------------UCUCGG- -5' |
|||||||
29615 | 3' | -62.2 | NC_006151.1 | + | 4143 | 0.66 | 0.657644 |
Target: 5'- gGGCCGGcCCCGGGGaucGCgUCGcGGAGCg -3' miRNA: 3'- gUCGGCU-GGGCUCU---CGgGGC-UCUCGg -5' |
|||||||
29615 | 3' | -62.2 | NC_006151.1 | + | 9897 | 0.66 | 0.657644 |
Target: 5'- cCGGCgG-UCCGGGAagaaaGCCCCGGcgccucGGGCCu -3' miRNA: 3'- -GUCGgCuGGGCUCU-----CGGGGCU------CUCGG- -5' |
|||||||
29615 | 3' | -62.2 | NC_006151.1 | + | 53412 | 0.66 | 0.657644 |
Target: 5'- aCGGCCGugagcaggugccGCCCGAGcAGCCC----GGCCu -3' miRNA: 3'- -GUCGGC------------UGGGCUC-UCGGGgcucUCGG- -5' |
|||||||
29615 | 3' | -62.2 | NC_006151.1 | + | 55447 | 0.66 | 0.657644 |
Target: 5'- gGGaCCGGCgCCGccGGCCCCGccggGGGGCg -3' miRNA: 3'- gUC-GGCUG-GGCucUCGGGGC----UCUCGg -5' |
|||||||
29615 | 3' | -62.2 | NC_006151.1 | + | 61845 | 0.66 | 0.657644 |
Target: 5'- uGGCCGcCCCGGGGaCCCUGAu-GCUc -3' miRNA: 3'- gUCGGCuGGGCUCUcGGGGCUcuCGG- -5' |
|||||||
29615 | 3' | -62.2 | NC_006151.1 | + | 59941 | 0.66 | 0.657644 |
Target: 5'- uCAGCggCGGCUCGc-AGCCCuCGAGcGCCa -3' miRNA: 3'- -GUCG--GCUGGGCucUCGGG-GCUCuCGG- -5' |
|||||||
29615 | 3' | -62.2 | NC_006151.1 | + | 50018 | 0.66 | 0.657644 |
Target: 5'- -cGCgCGGCCCGcgcGGcGcCCCCGGGcgcGGCCa -3' miRNA: 3'- guCG-GCUGGGC---UCuC-GGGGCUC---UCGG- -5' |
|||||||
29615 | 3' | -62.2 | NC_006151.1 | + | 30738 | 0.66 | 0.657644 |
Target: 5'- -cGCgGGCCCG-GAGUgCCGcGGGCg -3' miRNA: 3'- guCGgCUGGGCuCUCGgGGCuCUCGg -5' |
|||||||
29615 | 3' | -62.2 | NC_006151.1 | + | 28308 | 0.66 | 0.657644 |
Target: 5'- uGGCCGGCgCGu---CCCCGGGGcGCCc -3' miRNA: 3'- gUCGGCUGgGCucucGGGGCUCU-CGG- -5' |
|||||||
29615 | 3' | -62.2 | NC_006151.1 | + | 17202 | 0.66 | 0.657644 |
Target: 5'- gGGCCGugCCccGGGCCCCc-GAGUUc -3' miRNA: 3'- gUCGGCugGGcuCUCGGGGcuCUCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home