miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29615 3' -62.2 NC_006151.1 + 1838 0.72 0.315357
Target:  5'- -cGCCGGgCCGAGGGgaCCGAG-GCCg -3'
miRNA:   3'- guCGGCUgGGCUCUCggGGCUCuCGG- -5'
29615 3' -62.2 NC_006151.1 + 2003 0.74 0.224271
Target:  5'- cCGGCCGGgCCGAGGgggcGCCCCGcucagcGGAGCa -3'
miRNA:   3'- -GUCGGCUgGGCUCU----CGGGGC------UCUCGg -5'
29615 3' -62.2 NC_006151.1 + 2085 0.69 0.440365
Target:  5'- uGGCCuccaccuugaugGGCCCGAGcgGGCCgCG-GGGCCg -3'
miRNA:   3'- gUCGG------------CUGGGCUC--UCGGgGCuCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 2177 0.77 0.160399
Target:  5'- gGGCCGgccccggcGCCCGAGGcCCCCGcGGGCCg -3'
miRNA:   3'- gUCGGC--------UGGGCUCUcGGGGCuCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 2402 0.7 0.414823
Target:  5'- gGGCCGcggaGCUCGGcGAgGCCCCGGcGGCCg -3'
miRNA:   3'- gUCGGC----UGGGCU-CU-CGGGGCUcUCGG- -5'
29615 3' -62.2 NC_006151.1 + 2769 0.67 0.598847
Target:  5'- cCAGCaCGGCCgCGcGGAGCUCgCGGcacccGGGCCa -3'
miRNA:   3'- -GUCG-GCUGG-GC-UCUCGGG-GCU-----CUCGG- -5'
29615 3' -62.2 NC_006151.1 + 2961 0.7 0.414823
Target:  5'- -cGCCGGCgaagCCGAGGucccGCgCCGAGAGCa -3'
miRNA:   3'- guCGGCUG----GGCUCU----CGgGGCUCUCGg -5'
29615 3' -62.2 NC_006151.1 + 3295 0.7 0.390211
Target:  5'- gCGGCCGGgUCGAagguGAGCgCCGGGcGCCa -3'
miRNA:   3'- -GUCGGCUgGGCU----CUCGgGGCUCuCGG- -5'
29615 3' -62.2 NC_006151.1 + 3372 0.67 0.589087
Target:  5'- gGGCgGGCaguaggcggCGAGGGCCgCCucgGAGGGCCg -3'
miRNA:   3'- gUCGgCUGg--------GCUCUCGG-GG---CUCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 3471 0.72 0.308497
Target:  5'- gGGCaugGGCCCGAGcgGGCgCCG-GAGCCg -3'
miRNA:   3'- gUCGg--CUGGGCUC--UCGgGGCuCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 3554 0.66 0.618426
Target:  5'- gAGCgGGCCCGAGu-CCgaGGGAGCg -3'
miRNA:   3'- gUCGgCUGGGCUCucGGggCUCUCGg -5'
29615 3' -62.2 NC_006151.1 + 3625 0.72 0.288604
Target:  5'- uGGCCGuCCCcgcgGAGGGCCgcgCCGgAGAGCCc -3'
miRNA:   3'- gUCGGCuGGG----CUCUCGG---GGC-UCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 3671 0.7 0.414823
Target:  5'- -cGCCGucCCCGGGgcggcgGGCCCCGGGcGCg -3'
miRNA:   3'- guCGGCu-GGGCUC------UCGGGGCUCuCGg -5'
29615 3' -62.2 NC_006151.1 + 3833 0.67 0.598847
Target:  5'- uGGCgGgGCUgGAGGGCCC--GGAGCCg -3'
miRNA:   3'- gUCGgC-UGGgCUCUCGGGgcUCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 3957 0.73 0.257712
Target:  5'- -cGCgGGCCCGGGccgcgcggcGGCCUCGGcGAGCCg -3'
miRNA:   3'- guCGgCUGGGCUC---------UCGGGGCU-CUCGG- -5'
29615 3' -62.2 NC_006151.1 + 4143 0.66 0.657644
Target:  5'- gGGCCGGcCCCGGGGaucGCgUCGcGGAGCg -3'
miRNA:   3'- gUCGGCU-GGGCUCU---CGgGGC-UCUCGg -5'
29615 3' -62.2 NC_006151.1 + 4204 0.71 0.336623
Target:  5'- aGGCgGGCCCGAGGGCggCCGGGGcGCg -3'
miRNA:   3'- gUCGgCUGGGCUCUCGg-GGCUCU-CGg -5'
29615 3' -62.2 NC_006151.1 + 4519 0.67 0.579357
Target:  5'- gCGGCagGGCCCaGAGcgGGUCCUGGGcGGCCa -3'
miRNA:   3'- -GUCGg-CUGGG-CUC--UCGGGGCUC-UCGG- -5'
29615 3' -62.2 NC_006151.1 + 4905 0.66 0.60765
Target:  5'- gAGCCGGgccagggcucCCCGAGcggggugagcagcGGCCCgucggucggCGGGGGCCc -3'
miRNA:   3'- gUCGGCU----------GGGCUC-------------UCGGG---------GCUCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 5064 0.68 0.521897
Target:  5'- aGGCgGAggaggCCGAGGGCCgCG-GGGCCg -3'
miRNA:   3'- gUCGgCUg----GGCUCUCGGgGCuCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.