miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29615 5' -56.7 NC_006151.1 + 105959 0.67 0.799132
Target:  5'- -gGGCuCAUGGAGacGGCgACCGuGGCGGGc -3'
miRNA:   3'- agUCG-GUAUCUU--CUG-UGGC-CCGCCCu -5'
29615 5' -56.7 NC_006151.1 + 104002 0.76 0.359865
Target:  5'- gCGGCCGUGGAGGcGCGCCGcgcGGCGGaGGu -3'
miRNA:   3'- aGUCGGUAUCUUC-UGUGGC---CCGCC-CU- -5'
29615 5' -56.7 NC_006151.1 + 103831 0.74 0.41844
Target:  5'- gCGGCCGUGG-AGAUGCuCGGGCGGc- -3'
miRNA:   3'- aGUCGGUAUCuUCUGUG-GCCCGCCcu -5'
29615 5' -56.7 NC_006151.1 + 103536 0.67 0.80803
Target:  5'- cCGGCgCGcUGGuGGGCGCCGGGCagccgcucGGGGc -3'
miRNA:   3'- aGUCG-GU-AUCuUCUGUGGCCCG--------CCCU- -5'
29615 5' -56.7 NC_006151.1 + 102680 0.7 0.642352
Target:  5'- --cGCCGUGGAcgcggGGGCGcCCGGcGCGGGc -3'
miRNA:   3'- aguCGGUAUCU-----UCUGU-GGCC-CGCCCu -5'
29615 5' -56.7 NC_006151.1 + 102419 0.66 0.872811
Target:  5'- gCGGCCcgcgaacGAGGccauGCACCGGGCGcuGGAc -3'
miRNA:   3'- aGUCGGuau----CUUC----UGUGGCCCGC--CCU- -5'
29615 5' -56.7 NC_006151.1 + 101220 0.7 0.683144
Target:  5'- cCAGgCGUGGAcGGgGCCcGGCGGGGg -3'
miRNA:   3'- aGUCgGUAUCUuCUgUGGcCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 98004 0.7 0.662798
Target:  5'- -uGGCCgcGUAGgcGGCGCCGGccagguccGCGGGGu -3'
miRNA:   3'- agUCGG--UAUCuuCUGUGGCC--------CGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 96836 0.66 0.857785
Target:  5'- --cGCCAaUGGggGAaa--GGGCGGGGa -3'
miRNA:   3'- aguCGGU-AUCuuCUguggCCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 96582 0.68 0.780892
Target:  5'- --cGCCucgcGGcgcGAGGCGCCGGGCGcGGGc -3'
miRNA:   3'- aguCGGua--UC---UUCUGUGGCCCGC-CCU- -5'
29615 5' -56.7 NC_006151.1 + 93547 0.66 0.865403
Target:  5'- aUCAgcGCCAUGGGaaAGucCGCCgcggGGGCGGGc -3'
miRNA:   3'- -AGU--CGGUAUCU--UCu-GUGG----CCCGCCCu -5'
29615 5' -56.7 NC_006151.1 + 90374 0.68 0.742882
Target:  5'- gCAGCauc-GucGACGCCgcGGGCGGGAc -3'
miRNA:   3'- aGUCGguauCuuCUGUGG--CCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 88107 0.67 0.833733
Target:  5'- -gGGCCcgucgAGGuccGACAgCGGGCGGGc -3'
miRNA:   3'- agUCGGua---UCUu--CUGUgGCCCGCCCu -5'
29615 5' -56.7 NC_006151.1 + 82354 0.66 0.863896
Target:  5'- --cGCCGUGGuguacgugcgccGGACGCCGGGCGc-- -3'
miRNA:   3'- aguCGGUAUCu-----------UCUGUGGCCCGCccu -5'
29615 5' -56.7 NC_006151.1 + 78563 0.66 0.872811
Target:  5'- gCAcGCCcgGGAGGACGCggcgaCGGGCcuGGAg -3'
miRNA:   3'- aGU-CGGuaUCUUCUGUG-----GCCCGc-CCU- -5'
29615 5' -56.7 NC_006151.1 + 77922 0.71 0.601427
Target:  5'- aCGGCCGUGGuGGugAa-GGGCGGGc -3'
miRNA:   3'- aGUCGGUAUCuUCugUggCCCGCCCu -5'
29615 5' -56.7 NC_006151.1 + 72503 0.71 0.611643
Target:  5'- -gAGCgAaAGAAGACACugacgCGGGCGGGu -3'
miRNA:   3'- agUCGgUaUCUUCUGUG-----GCCCGCCCu -5'
29615 5' -56.7 NC_006151.1 + 71068 0.66 0.858556
Target:  5'- cCGGCCGUGGucuucuaccaccacGGCGCCgcGGGCGcGGGc -3'
miRNA:   3'- aGUCGGUAUCuu------------CUGUGG--CCCGC-CCU- -5'
29615 5' -56.7 NC_006151.1 + 67436 0.72 0.521083
Target:  5'- aUUAGCUcgGGGAuGGCG-CGGGCGGGGg -3'
miRNA:   3'- -AGUCGGuaUCUU-CUGUgGCCCGCCCU- -5'
29615 5' -56.7 NC_006151.1 + 65109 0.67 0.833733
Target:  5'- gCAuGCCccaGGAGGACGCCcgucGGCGGGc -3'
miRNA:   3'- aGU-CGGua-UCUUCUGUGGc---CCGCCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.