Results 1 - 20 of 220 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29616 | 3' | -62.5 | NC_006151.1 | + | 117643 | 0.87 | 0.027744 |
Target: 5'- cGUGCACgCCgCGCUGCUcCGGGGCGUCCa -3' miRNA: 3'- aCACGUG-GG-GCGACGA-GCUCCGCGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 9047 | 0.82 | 0.064241 |
Target: 5'- --gGCGCCCCGCgUGCUCcgGGGGCGCCg -3' miRNA: 3'- acaCGUGGGGCG-ACGAG--CUCCGCGGg -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 100065 | 0.8 | 0.081058 |
Target: 5'- cGUGCGCgcggCCGCcgaggUGCUCGAGGCGCCg -3' miRNA: 3'- aCACGUGg---GGCG-----ACGAGCUCCGCGGg -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 33945 | 0.77 | 0.138001 |
Target: 5'- --cGCGCCCCGgggGCUCGGggcgggacgcGGCGCCCg -3' miRNA: 3'- acaCGUGGGGCga-CGAGCU----------CCGCGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 63808 | 0.77 | 0.124875 |
Target: 5'- --aGCGCCUCGCcggGCccCGGGGCGCCCu -3' miRNA: 3'- acaCGUGGGGCGa--CGa-GCUCCGCGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 33208 | 0.77 | 0.141475 |
Target: 5'- --gGCGcCCCCGgaGCacgCGGGGCGCCCc -3' miRNA: 3'- acaCGU-GGGGCgaCGa--GCUCCGCGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 106559 | 0.77 | 0.141475 |
Target: 5'- aUGUGCAUCCCcccgcgGCUGCUCucGGCGCUg -3' miRNA: 3'- -ACACGUGGGG------CGACGAGcuCCGCGGg -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 114423 | 0.77 | 0.130959 |
Target: 5'- cGUGCACCaCCGCgugcuggaccgccUGCUCGGGGCcuGCgCCg -3' miRNA: 3'- aCACGUGG-GGCG-------------ACGAGCUCCG--CG-GG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 40237 | 0.76 | 0.152382 |
Target: 5'- -cUGCugCuCCGCUGagCGGGGCGCCCc -3' miRNA: 3'- acACGugG-GGCGACgaGCUCCGCGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 14163 | 0.76 | 0.145029 |
Target: 5'- --cGCGCCCCGC---UCGAGGaCGCCCg -3' miRNA: 3'- acaCGUGGGGCGacgAGCUCC-GCGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 75849 | 0.76 | 0.148664 |
Target: 5'- --aGCACCCCGUcGa-CGGGGCGCCCc -3' miRNA: 3'- acaCGUGGGGCGaCgaGCUCCGCGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 7650 | 0.76 | 0.159679 |
Target: 5'- --cGCGCCUCGC-GCUCGgcgcgcgcuccgaGGGCGCCCc -3' miRNA: 3'- acaCGUGGGGCGaCGAGC-------------UCCGCGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 109755 | 0.76 | 0.16811 |
Target: 5'- cGUG-GCCgCCGCcGUUgGAGGCGCCCg -3' miRNA: 3'- aCACgUGG-GGCGaCGAgCUCCGCGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 120341 | 0.76 | 0.164047 |
Target: 5'- --cGCGCgCCCGCguggccggGCUCGcGGGCGCCUa -3' miRNA: 3'- acaCGUG-GGGCGa-------CGAGC-UCCGCGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 72846 | 0.75 | 0.187983 |
Target: 5'- cUG-GUACuCCCGUUGCUCGucggcgaggcggcGGCGCCCg -3' miRNA: 3'- -ACaCGUG-GGGCGACGAGCu------------CCGCGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 121187 | 0.75 | 0.172264 |
Target: 5'- cGUGCugCaCGC-GCUCGGGGCGCgCa -3' miRNA: 3'- aCACGugGgGCGaCGAGCUCCGCGgG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 70633 | 0.75 | 0.176509 |
Target: 5'- cGgcgGCGCCguggCCGC-GCgCGAGGCGCCCg -3' miRNA: 3'- aCa--CGUGG----GGCGaCGaGCUCCGCGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 142321 | 0.74 | 0.203974 |
Target: 5'- aUGgGgGCCCgCGC-GCUCGcGGCGCCCg -3' miRNA: 3'- -ACaCgUGGG-GCGaCGAGCuCCGCGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 2995 | 0.74 | 0.213922 |
Target: 5'- --aGCACCCCcugggcguugagGCgGCcgaugUCGGGGCGCCCg -3' miRNA: 3'- acaCGUGGGG------------CGaCG-----AGCUCCGCGGG- -5' |
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29616 | 3' | -62.5 | NC_006151.1 | + | 104170 | 0.74 | 0.213922 |
Target: 5'- -cUGCGCCCCGCcGC-CGAGcGCGCgCu -3' miRNA: 3'- acACGUGGGGCGaCGaGCUC-CGCGgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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