miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29617 3' -57 NC_006151.1 + 92052 0.7 0.654481
Target:  5'- uGCCUgCUGCGcCUGCUGCGcaUGCUGCa -3'
miRNA:   3'- -CGGA-GACGUaGGCGGCGUagGUGACG- -5'
29617 3' -57 NC_006151.1 + 109373 0.7 0.654481
Target:  5'- aCCUCUuccGCccCCGCCGCA-CCACcGCc -3'
miRNA:   3'- cGGAGA---CGuaGGCGGCGUaGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 109151 0.7 0.654481
Target:  5'- cGUCUCcacaucCcgCCGCCGCAgCCugUGCa -3'
miRNA:   3'- -CGGAGac----GuaGGCGGCGUaGGugACG- -5'
29617 3' -57 NC_006151.1 + 32243 0.7 0.654481
Target:  5'- gGCCgcgGCGaCCGCCGCcgCCGCUc- -3'
miRNA:   3'- -CGGagaCGUaGGCGGCGuaGGUGAcg -5'
29617 3' -57 NC_006151.1 + 46824 0.7 0.664684
Target:  5'- uGCCUCUGCccccgagaCCGCCGCcccCCGggGCg -3'
miRNA:   3'- -CGGAGACGua------GGCGGCGua-GGUgaCG- -5'
29617 3' -57 NC_006151.1 + 112432 0.7 0.664684
Target:  5'- cGCCgcgCcGCcgCCGCCGCGcgCCAUggGCu -3'
miRNA:   3'- -CGGa--GaCGuaGGCGGCGUa-GGUGa-CG- -5'
29617 3' -57 NC_006151.1 + 105931 0.69 0.674861
Target:  5'- cGCCgagCUGCGcCCGCCGCucaCCGagggGCu -3'
miRNA:   3'- -CGGa--GACGUaGGCGGCGua-GGUga--CG- -5'
29617 3' -57 NC_006151.1 + 5893 0.69 0.674861
Target:  5'- gGCCUCUGC---CGCUGCGagUGCUGCc -3'
miRNA:   3'- -CGGAGACGuagGCGGCGUagGUGACG- -5'
29617 3' -57 NC_006151.1 + 37380 0.69 0.674861
Target:  5'- cCCUCcgGCcgaCgGCCGCGUCCGCUacgGCg -3'
miRNA:   3'- cGGAGa-CGua-GgCGGCGUAGGUGA---CG- -5'
29617 3' -57 NC_006151.1 + 60690 0.69 0.674861
Target:  5'- uCCUCccgcGCGcCCGCCGCGcCCGCcGCg -3'
miRNA:   3'- cGGAGa---CGUaGGCGGCGUaGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 82987 0.69 0.674861
Target:  5'- cGCgUCUGCG-CCGCCaCggCCGCgGCg -3'
miRNA:   3'- -CGgAGACGUaGGCGGcGuaGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 69540 0.69 0.674861
Target:  5'- cGCC-CUGCAUCaGcCCGCucgCCACgugGCu -3'
miRNA:   3'- -CGGaGACGUAGgC-GGCGua-GGUGa--CG- -5'
29617 3' -57 NC_006151.1 + 37172 0.69 0.674861
Target:  5'- cGCCg--GCGcCCGCCGCGgccCCGCgGCc -3'
miRNA:   3'- -CGGagaCGUaGGCGGCGUa--GGUGaCG- -5'
29617 3' -57 NC_006151.1 + 86076 0.69 0.674861
Target:  5'- aGUCUCcGCGcgcgcgCCGCCGCcgCCAUgggGCc -3'
miRNA:   3'- -CGGAGaCGUa-----GGCGGCGuaGGUGa--CG- -5'
29617 3' -57 NC_006151.1 + 78158 0.69 0.685004
Target:  5'- cGCCUCgGCcgCCguggucgagGCCGUGUCCGCcgucGCg -3'
miRNA:   3'- -CGGAGaCGuaGG---------CGGCGUAGGUGa---CG- -5'
29617 3' -57 NC_006151.1 + 114109 0.69 0.685004
Target:  5'- gGCCUCgGCggCUGCUGCc-CCACgUGCg -3'
miRNA:   3'- -CGGAGaCGuaGGCGGCGuaGGUG-ACG- -5'
29617 3' -57 NC_006151.1 + 45791 0.69 0.685004
Target:  5'- cCCUC-GCcaCCGCCGCAgcgccugUCACUGCc -3'
miRNA:   3'- cGGAGaCGuaGGCGGCGUa------GGUGACG- -5'
29617 3' -57 NC_006151.1 + 58560 0.69 0.695102
Target:  5'- uCCUCUucGCcgCCGCCGC--CCGCcgGCg -3'
miRNA:   3'- cGGAGA--CGuaGGCGGCGuaGGUGa-CG- -5'
29617 3' -57 NC_006151.1 + 104268 0.69 0.695102
Target:  5'- cGCCggcgCggcgGCGggcccgCCGCUGCAggCGCUGCa -3'
miRNA:   3'- -CGGa---Ga---CGUa-----GGCGGCGUagGUGACG- -5'
29617 3' -57 NC_006151.1 + 139295 0.69 0.695102
Target:  5'- cCCUCgGCGUCUGCgGCGcgUGCUGCu -3'
miRNA:   3'- cGGAGaCGUAGGCGgCGUagGUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.