miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29618 5' -51.4 NC_006151.1 + 142240 0.68 0.970793
Target:  5'- gUCGC-GACGAGGCGUCGgUcaUCGCGg -3'
miRNA:   3'- -GGUGuUUGCUUCGCAGCgAcaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 141620 0.68 0.964491
Target:  5'- gCCGgGAuCGGGcGgGUCGCUG-CCGCGg -3'
miRNA:   3'- -GGUgUUuGCUU-CgCAGCGACaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 140052 0.7 0.929963
Target:  5'- gCCGCAcgccacCGAGGCGgcgCGCgUGcUCCGCGa -3'
miRNA:   3'- -GGUGUuu----GCUUCGCa--GCG-AC-AGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 139550 0.68 0.967751
Target:  5'- uCgGgGAGCGAggAGCGgCGCccgGUCCGCGa -3'
miRNA:   3'- -GgUgUUUGCU--UCGCaGCGa--CAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 139085 0.67 0.978678
Target:  5'- uCCGCcug-GggGCGcgcauggCGCUGUUCACGa -3'
miRNA:   3'- -GGUGuuugCuuCGCa------GCGACAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 135977 0.75 0.707758
Target:  5'- gCCAUGGACGAGGCGgccaccuUCGCccUCCACGa -3'
miRNA:   3'- -GGUGUUUGCUUCGC-------AGCGacAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 135534 0.66 0.989579
Target:  5'- gCgGCGAGCGggGCGgggaggaucaCGUUGagCACGg -3'
miRNA:   3'- -GgUGUUUGCuuCGCa---------GCGACagGUGC- -5'
29618 5' -51.4 NC_006151.1 + 135354 0.67 0.986588
Target:  5'- uCCGCGAGcCGccGCG-CGUUGgCCGCGu -3'
miRNA:   3'- -GGUGUUU-GCuuCGCaGCGACaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 135266 0.68 0.973623
Target:  5'- gCGCAgggccugcucGACGAGGuCGUCcgUGUCCGCGu -3'
miRNA:   3'- gGUGU----------UUGCUUC-GCAGcgACAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 131747 0.68 0.976249
Target:  5'- gCC-CGGGCGAGGCGaccgUCGCgGUcgcgaCCGCGg -3'
miRNA:   3'- -GGuGUUUGCUUCGC----AGCGaCA-----GGUGC- -5'
29618 5' -51.4 NC_006151.1 + 130836 0.73 0.823679
Target:  5'- gCGCGGcGCGGAGuCGUCGCcGUCgGCGg -3'
miRNA:   3'- gGUGUU-UGCUUC-GCAGCGaCAGgUGC- -5'
29618 5' -51.4 NC_006151.1 + 130546 0.67 0.986588
Target:  5'- cCCGC--GCGAgGGCGgcgCGCUGccgccCCACGa -3'
miRNA:   3'- -GGUGuuUGCU-UCGCa--GCGACa----GGUGC- -5'
29618 5' -51.4 NC_006151.1 + 129765 0.67 0.982978
Target:  5'- gCGCGAagGCGAcgagGGCGUCGCUc-CCGCc -3'
miRNA:   3'- gGUGUU--UGCU----UCGCAGCGAcaGGUGc -5'
29618 5' -51.4 NC_006151.1 + 129600 0.7 0.934628
Target:  5'- uCCGCGAGCGGgcacgugcgcaccAGCGggucgagCGC-GUCCAUGa -3'
miRNA:   3'- -GGUGUUUGCU-------------UCGCa------GCGaCAGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 129117 0.66 0.990865
Target:  5'- gCCAgGGcCGAGGCG-CGCUGggcgCCAa- -3'
miRNA:   3'- -GGUgUUuGCUUCGCaGCGACa---GGUgc -5'
29618 5' -51.4 NC_006151.1 + 128890 0.71 0.893718
Target:  5'- aCCACAgcagcaugacgGugGggGCGUCGCgcucgucGUCCgaGCGc -3'
miRNA:   3'- -GGUGU-----------UugCuuCGCAGCGa------CAGG--UGC- -5'
29618 5' -51.4 NC_006151.1 + 127329 0.66 0.992022
Target:  5'- uCCGCGGGCGggG-GU-GCUGguaCACGu -3'
miRNA:   3'- -GGUGUUUGCuuCgCAgCGACag-GUGC- -5'
29618 5' -51.4 NC_006151.1 + 124067 0.66 0.99306
Target:  5'- gCGCGGACGGccguGCG-CGCgg-CCGCGa -3'
miRNA:   3'- gGUGUUUGCUu---CGCaGCGacaGGUGC- -5'
29618 5' -51.4 NC_006151.1 + 122655 0.66 0.992022
Target:  5'- aCCugGAGCGGcgcgAGCGcCGCgccgagGUgCGCGc -3'
miRNA:   3'- -GGugUUUGCU----UCGCaGCGa-----CAgGUGC- -5'
29618 5' -51.4 NC_006151.1 + 122603 0.67 0.984865
Target:  5'- uCCACGAACcAGGCGgugCGggcccucgacCUGUUCACGc -3'
miRNA:   3'- -GGUGUUUGcUUCGCa--GC----------GACAGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.