Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29619 | 3' | -49.6 | NC_006151.1 | + | 118275 | 0.66 | 0.998072 |
Target: 5'- cCCAaccaCUUCCACCCcaacGUGUUCuucuUCCa -3' miRNA: 3'- -GGUag--GAAGGUGGGua--CGUAAGu---AGG- -5' |
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29619 | 3' | -49.6 | NC_006151.1 | + | 139043 | 0.66 | 0.998072 |
Target: 5'- gCCAUCCca-CGCUgAUcGCGcUCAUCCu -3' miRNA: 3'- -GGUAGGaagGUGGgUA-CGUaAGUAGG- -5' |
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29619 | 3' | -49.6 | NC_006151.1 | + | 77209 | 0.66 | 0.998072 |
Target: 5'- uCCAUCCccgcgCCGCCgCGUGUGUgcg-CCg -3' miRNA: 3'- -GGUAGGaa---GGUGG-GUACGUAaguaGG- -5' |
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29619 | 3' | -49.6 | NC_006151.1 | + | 45241 | 0.66 | 0.997694 |
Target: 5'- cCCGUCCUccUCCcCCCuUGCucccuGUCCc -3' miRNA: 3'- -GGUAGGA--AGGuGGGuACGuaag-UAGG- -5' |
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29619 | 3' | -49.6 | NC_006151.1 | + | 45970 | 0.66 | 0.996753 |
Target: 5'- uCCAUCC-UCCACCaCGUGgAcagcgacgcUUCGUUUg -3' miRNA: 3'- -GGUAGGaAGGUGG-GUACgU---------AAGUAGG- -5' |
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29619 | 3' | -49.6 | NC_006151.1 | + | 135879 | 0.66 | 0.996753 |
Target: 5'- gCGUCCgcgugCgGCCCGUGU--UCGUCg -3' miRNA: 3'- gGUAGGaa---GgUGGGUACGuaAGUAGg -5' |
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29619 | 3' | -49.6 | NC_006151.1 | + | 140509 | 0.67 | 0.995514 |
Target: 5'- cCCA-CCUgCCGCCUgacGUGCAgcuacacccUCGUCCc -3' miRNA: 3'- -GGUaGGAaGGUGGG---UACGUa--------AGUAGG- -5' |
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29619 | 3' | -49.6 | NC_006151.1 | + | 132286 | 0.67 | 0.995514 |
Target: 5'- aCGUCCUgggCCACCaccugguccgCGUGCAggCG-CCa -3' miRNA: 3'- gGUAGGAa--GGUGG----------GUACGUaaGUaGG- -5' |
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29619 | 3' | -49.6 | NC_006151.1 | + | 109895 | 0.67 | 0.995514 |
Target: 5'- cCCAUCC-UCCGCCgCGgcgGCAgcagCAgagaccUCCg -3' miRNA: 3'- -GGUAGGaAGGUGG-GUa--CGUaa--GU------AGG- -5' |
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29619 | 3' | -49.6 | NC_006151.1 | + | 36156 | 0.67 | 0.995514 |
Target: 5'- cCCGUCCUccuUCgGCCCAgcaGCAgcagCAgccCCg -3' miRNA: 3'- -GGUAGGA---AGgUGGGUa--CGUaa--GUa--GG- -5' |
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29619 | 3' | -49.6 | NC_006151.1 | + | 135637 | 0.67 | 0.993915 |
Target: 5'- aCCAcCCggagaagaugCCGCCCA-GCAUgauccgCGUCCu -3' miRNA: 3'- -GGUaGGaa--------GGUGGGUaCGUAa-----GUAGG- -5' |
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29619 | 3' | -49.6 | NC_006151.1 | + | 18639 | 0.67 | 0.993732 |
Target: 5'- cCCAgcgCCagcacaaacagCCGCCCggGCG-UCGUCCg -3' miRNA: 3'- -GGUa--GGaa---------GGUGGGuaCGUaAGUAGG- -5' |
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29619 | 3' | -49.6 | NC_006151.1 | + | 78905 | 0.67 | 0.992958 |
Target: 5'- aCGUCCgcgCC-CCCGUcCAUUCucuGUCCg -3' miRNA: 3'- gGUAGGaa-GGuGGGUAcGUAAG---UAGG- -5' |
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29619 | 3' | -49.6 | NC_006151.1 | + | 80505 | 0.67 | 0.991886 |
Target: 5'- uCCAgcagCCUUCC-CCCGUGgAUggCGcUCCc -3' miRNA: 3'- -GGUa---GGAAGGuGGGUACgUAa-GU-AGG- -5' |
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29619 | 3' | -49.6 | NC_006151.1 | + | 37475 | 0.67 | 0.991886 |
Target: 5'- aCCGcgCCgcggCCggGCCCGUGCccgucUUCAUCCc -3' miRNA: 3'- -GGUa-GGaa--GG--UGGGUACGu----AAGUAGG- -5' |
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29619 | 3' | -49.6 | NC_006151.1 | + | 94269 | 0.67 | 0.991772 |
Target: 5'- aCGUCCUUggcgucgUCGCCCAgcgGCAg--GUCCg -3' miRNA: 3'- gGUAGGAA-------GGUGGGUa--CGUaagUAGG- -5' |
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29619 | 3' | -49.6 | NC_006151.1 | + | 121137 | 0.68 | 0.988782 |
Target: 5'- aCCAUCCUggccgacggcgggCCGCUgGUGCAgaCggCCg -3' miRNA: 3'- -GGUAGGAa------------GGUGGgUACGUaaGuaGG- -5' |
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29619 | 3' | -49.6 | NC_006151.1 | + | 50178 | 0.68 | 0.986246 |
Target: 5'- gCggCCggCCGCgCcgGUGUUCAUCCa -3' miRNA: 3'- gGuaGGaaGGUGgGuaCGUAAGUAGG- -5' |
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29619 | 3' | -49.6 | NC_006151.1 | + | 26650 | 0.68 | 0.986246 |
Target: 5'- cCCGUCCUccucguccUCCucguCCUcgGCcucgUCGUCCu -3' miRNA: 3'- -GGUAGGA--------AGGu---GGGuaCGua--AGUAGG- -5' |
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29619 | 3' | -49.6 | NC_006151.1 | + | 93251 | 0.68 | 0.986074 |
Target: 5'- aCCAUCCUuccccaguccaagUCCACCCccGCcggcccCAUCUc -3' miRNA: 3'- -GGUAGGA-------------AGGUGGGuaCGuaa---GUAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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