miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29619 5' -55.8 NC_006151.1 + 44842 0.66 0.906521
Target:  5'- cGGGgcGAGcgGGGucgUGGAggGGGGGCGc -3'
miRNA:   3'- cCCCuaCUCa-CCU---ACCUa-CCUCCGCu -5'
29619 5' -55.8 NC_006151.1 + 40904 0.66 0.900236
Target:  5'- uGGGAaGaAGUGGAUGGGguccuccuccUGGAGGg-- -3'
miRNA:   3'- cCCCUaC-UCACCUACCU----------ACCUCCgcu -5'
29619 5' -55.8 NC_006151.1 + 30030 0.66 0.900236
Target:  5'- gGGGGAgGAGgGGggGGA-GGAGugaGCGGg -3'
miRNA:   3'- -CCCCUaCUCaCCuaCCUaCCUC---CGCU- -5'
29619 5' -55.8 NC_006151.1 + 84391 0.66 0.89372
Target:  5'- cGGGGAcGGGcggGGAgcGGGUGGGcgcGGUGAu -3'
miRNA:   3'- -CCCCUaCUCa--CCUa-CCUACCU---CCGCU- -5'
29619 5' -55.8 NC_006151.1 + 20127 0.67 0.886974
Target:  5'- cGGGGcUGGGgGGcgGGcgccgcGGGGGCGGc -3'
miRNA:   3'- -CCCCuACUCaCCuaCCua----CCUCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 91681 0.67 0.886974
Target:  5'- cGGGuGGUGcgcGUGGGUGG--GGuGGCGGu -3'
miRNA:   3'- -CCC-CUACu--CACCUACCuaCCuCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 33173 0.67 0.880003
Target:  5'- cGGGGAggaagggagGuGUGGggGGAUGGccggccGGCGc -3'
miRNA:   3'- -CCCCUa--------CuCACCuaCCUACCu-----CCGCu -5'
29619 5' -55.8 NC_006151.1 + 45603 0.67 0.880003
Target:  5'- gGGGGAgccccgacgGGGcGGgcGGAaGGGGGCGu -3'
miRNA:   3'- -CCCCUa--------CUCaCCuaCCUaCCUCCGCu -5'
29619 5' -55.8 NC_006151.1 + 30996 0.67 0.872811
Target:  5'- cGGGGAgGAGgagGGA-GGAaGGGGGUc- -3'
miRNA:   3'- -CCCCUaCUCa--CCUaCCUaCCUCCGcu -5'
29619 5' -55.8 NC_006151.1 + 5041 0.67 0.865403
Target:  5'- cGGGGAggccgcGGcGGA-GGA-GGAGGCGGa -3'
miRNA:   3'- -CCCCUac----UCaCCUaCCUaCCUCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 30638 0.67 0.865403
Target:  5'- -cGGGUGGGUGGG-GGA-GGGGGuUGAu -3'
miRNA:   3'- ccCCUACUCACCUaCCUaCCUCC-GCU- -5'
29619 5' -55.8 NC_006151.1 + 72595 0.67 0.849963
Target:  5'- cGGGGUGAG-GGggGGGgcaGGGCGGa -3'
miRNA:   3'- cCCCUACUCaCCuaCCUaccUCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 27953 0.68 0.841943
Target:  5'- cGGGGUGGGgagGGA-GGggGGAcGGgGAg -3'
miRNA:   3'- cCCCUACUCa--CCUaCCuaCCU-CCgCU- -5'
29619 5' -55.8 NC_006151.1 + 79162 0.68 0.8395
Target:  5'- aGGGGGUGAGcGagcgggcaugugacGAUGGGUGGAGcUGGu -3'
miRNA:   3'- -CCCCUACUCaC--------------CUACCUACCUCcGCU- -5'
29619 5' -55.8 NC_006151.1 + 8112 0.68 0.838682
Target:  5'- aGGGGggGGGUcGGAgcgcGGAccccgcccgguggGGGGGCGGg -3'
miRNA:   3'- -CCCCuaCUCA-CCUa---CCUa------------CCUCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 87769 0.68 0.832901
Target:  5'- cGGGGUGuGGUGGGgcgggagagagugUGGGUGGgagaGGGUGGg -3'
miRNA:   3'- cCCCUAC-UCACCU-------------ACCUACC----UCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 12415 0.68 0.825338
Target:  5'- aGGGGGcUGGGUGG--GGu--GAGGCGAg -3'
miRNA:   3'- -CCCCU-ACUCACCuaCCuacCUCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 43707 0.68 0.817633
Target:  5'- cGGGGA-GAGgaaccgaaaaaucggGGAcGG-UGGGGGCGGg -3'
miRNA:   3'- -CCCCUaCUCa--------------CCUaCCuACCUCCGCU- -5'
29619 5' -55.8 NC_006151.1 + 42776 0.68 0.813293
Target:  5'- gGGGGGUGGGacgugacugggcgGGGUGGcgGGAcGCGu -3'
miRNA:   3'- -CCCCUACUCa------------CCUACCuaCCUcCGCu -5'
29619 5' -55.8 NC_006151.1 + 44798 0.68 0.799132
Target:  5'- gGGGGGUGAaaggGGGUGcuAUGGGGGUGc -3'
miRNA:   3'- -CCCCUACUca--CCUACc-UACCUCCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.