miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29620 5' -58.7 NC_006151.1 + 32029 0.66 0.812647
Target:  5'- cUCGCCCcCCUCCGCGUC-CgcagccgcCUCUg -3'
miRNA:   3'- -GGCGGGaGGGGGCGUAGaGaa------GAGAg -5'
29620 5' -58.7 NC_006151.1 + 26404 0.66 0.803992
Target:  5'- cCCGCCCUCCUcgcccucuCCGUcuUCgUCUUCgUCUUc -3'
miRNA:   3'- -GGCGGGAGGG--------GGCGu-AG-AGAAG-AGAG- -5'
29620 5' -58.7 NC_006151.1 + 12855 0.66 0.803992
Target:  5'- -aGCCUUCUCCgCGCGgucccgcCUCUcCUCUCc -3'
miRNA:   3'- ggCGGGAGGGG-GCGUa------GAGAaGAGAG- -5'
29620 5' -58.7 NC_006151.1 + 117960 0.66 0.795188
Target:  5'- aCC-CCgUCCgCCGCG-C-CUUCUCUCu -3'
miRNA:   3'- -GGcGGgAGGgGGCGUaGaGAAGAGAG- -5'
29620 5' -58.7 NC_006151.1 + 36422 0.66 0.795188
Target:  5'- uCCGCagCCUCCCCgGCcuccucCUCcggCUCUCc -3'
miRNA:   3'- -GGCG--GGAGGGGgCGua----GAGaa-GAGAG- -5'
29620 5' -58.7 NC_006151.1 + 7850 0.66 0.789836
Target:  5'- gUCGCCCacccacccccuccucUCCCCCaccccucUAUCUCU-CUCUCc -3'
miRNA:   3'- -GGCGGG---------------AGGGGGc------GUAGAGAaGAGAG- -5'
29620 5' -58.7 NC_006151.1 + 8895 0.66 0.786241
Target:  5'- uCCGaCUCUCCUCCGUcuccUCUCcucCUCUCc -3'
miRNA:   3'- -GGC-GGGAGGGGGCGu---AGAGaa-GAGAG- -5'
29620 5' -58.7 NC_006151.1 + 51076 0.66 0.777161
Target:  5'- gCGgCCUCCUCCGCucgcccgccccUCUCcgcCUCUCa -3'
miRNA:   3'- gGCgGGAGGGGGCGu----------AGAGaa-GAGAG- -5'
29620 5' -58.7 NC_006151.1 + 112527 0.66 0.777161
Target:  5'- aCGCCCUCUUCCGCGagcugaUCUUCg--- -3'
miRNA:   3'- gGCGGGAGGGGGCGUag----AGAAGagag -5'
29620 5' -58.7 NC_006151.1 + 29860 0.66 0.777161
Target:  5'- gCC-CCCUCUccaguuCCCGC-UCUCgcUCUCUCc -3'
miRNA:   3'- -GGcGGGAGG------GGGCGuAGAGa-AGAGAG- -5'
29620 5' -58.7 NC_006151.1 + 32392 0.66 0.777161
Target:  5'- gCGCCCcggCUUCUGCuucuuauUCUCcUCUCUCg -3'
miRNA:   3'- gGCGGGa--GGGGGCGu------AGAGaAGAGAG- -5'
29620 5' -58.7 NC_006151.1 + 7013 0.66 0.776246
Target:  5'- aUGUCCggCCCCCGCGgcggccaUCUCggCUCg- -3'
miRNA:   3'- gGCGGGa-GGGGGCGU-------AGAGaaGAGag -5'
29620 5' -58.7 NC_006151.1 + 118595 0.67 0.758633
Target:  5'- gCCGCUCUaCCCCgUGCAcCUCUUCa--- -3'
miRNA:   3'- -GGCGGGA-GGGG-GCGUaGAGAAGagag -5'
29620 5' -58.7 NC_006151.1 + 46769 0.67 0.758633
Target:  5'- cUCGCuCCUCCCCCuCGUCUUcaCcCUCc -3'
miRNA:   3'- -GGCG-GGAGGGGGcGUAGAGaaGaGAG- -5'
29620 5' -58.7 NC_006151.1 + 881 0.67 0.758633
Target:  5'- cCCGCUCUCCCaCCGCcUUUCccUCccCUCc -3'
miRNA:   3'- -GGCGGGAGGG-GGCGuAGAGa-AGa-GAG- -5'
29620 5' -58.7 NC_006151.1 + 42463 0.67 0.749202
Target:  5'- gCCGUcuccuCCUCCCCCaacuccccggGCGccguuuagcgccUCUCUccUCUCUCg -3'
miRNA:   3'- -GGCG-----GGAGGGGG----------CGU------------AGAGA--AGAGAG- -5'
29620 5' -58.7 NC_006151.1 + 142714 0.67 0.73391
Target:  5'- gCCaGCUCUCCCCCGgGcccccacaacUCUCUggccgggggcccagCUCUCc -3'
miRNA:   3'- -GG-CGGGAGGGGGCgU----------AGAGAa-------------GAGAG- -5'
29620 5' -58.7 NC_006151.1 + 29920 0.67 0.730052
Target:  5'- cCCGCCCcuccuUCCCCCaauCAUCcaUCcaUCUCUCc -3'
miRNA:   3'- -GGCGGG-----AGGGGGc--GUAG--AGa-AGAGAG- -5'
29620 5' -58.7 NC_006151.1 + 37255 0.67 0.712536
Target:  5'- cCCGCCCggCCCCCGCGcaggaagcgccgCUCcaccaacaaccacCUCUCg -3'
miRNA:   3'- -GGCGGGa-GGGGGCGUa-----------GAGaa-----------GAGAG- -5'
29620 5' -58.7 NC_006151.1 + 32174 0.68 0.700736
Target:  5'- cCCGCCUUCCUCCGCccgccuuUC-CUUCccggaCUCg -3'
miRNA:   3'- -GGCGGGAGGGGGCGu------AGaGAAGa----GAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.