miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29621 3' -59.2 NC_006151.1 + 127098 0.78 0.189044
Target:  5'- cCCuccgUCCCuCUCCCCUCCGUcCCGCg -3'
miRNA:   3'- uGGuaa-AGGG-GAGGGGAGGCGaGGUG- -5'
29621 3' -59.2 NC_006151.1 + 32019 0.77 0.193769
Target:  5'- uCUGUgUCCCCUcgccCCCCUCCGCgUCCGCa -3'
miRNA:   3'- uGGUAaAGGGGA----GGGGAGGCG-AGGUG- -5'
29621 3' -59.2 NC_006151.1 + 108808 0.75 0.258896
Target:  5'- gGCgCAg--CCCCUUCCCUCCGCuguUCUACg -3'
miRNA:   3'- -UG-GUaaaGGGGAGGGGAGGCG---AGGUG- -5'
29621 3' -59.2 NC_006151.1 + 11385 0.75 0.265062
Target:  5'- cGCCucUUCCCCcCUCCUCCGCcgCCGCc -3'
miRNA:   3'- -UGGuaAAGGGGaGGGGAGGCGa-GGUG- -5'
29621 3' -59.2 NC_006151.1 + 12460 0.74 0.29092
Target:  5'- cACCAccaCCCCUCCCCUCCcuCUCCu- -3'
miRNA:   3'- -UGGUaaaGGGGAGGGGAGGc-GAGGug -5'
29621 3' -59.2 NC_006151.1 + 11413 0.74 0.311581
Target:  5'- cGCCAguccUCCUcgCUCCUCUCCGC-CCACg -3'
miRNA:   3'- -UGGUaa--AGGG--GAGGGGAGGCGaGGUG- -5'
29621 3' -59.2 NC_006151.1 + 31901 0.74 0.318712
Target:  5'- cCCucccUCCCCUCCCCUCCcGCgUCCuGCg -3'
miRNA:   3'- uGGuaa-AGGGGAGGGGAGG-CG-AGG-UG- -5'
29621 3' -59.2 NC_006151.1 + 40381 0.73 0.348452
Target:  5'- cCCGUccccgUCCuCCUCCuCCUCUGCgUCCGCg -3'
miRNA:   3'- uGGUAa----AGG-GGAGG-GGAGGCG-AGGUG- -5'
29621 3' -59.2 NC_006151.1 + 93037 0.73 0.348452
Target:  5'- uCCGUcgUCgCCUCCCCcCCGCgggCCACu -3'
miRNA:   3'- uGGUAa-AGgGGAGGGGaGGCGa--GGUG- -5'
29621 3' -59.2 NC_006151.1 + 25436 0.73 0.372024
Target:  5'- cCCGUcaUCCCUCCCCgcggCCGC-CCGCc -3'
miRNA:   3'- uGGUAaaGGGGAGGGGa---GGCGaGGUG- -5'
29621 3' -59.2 NC_006151.1 + 25980 0.72 0.380119
Target:  5'- cCCAUcccacUCCCCUCuCCCUCCaccguCUCCACc -3'
miRNA:   3'- uGGUAa----AGGGGAG-GGGAGGc----GAGGUG- -5'
29621 3' -59.2 NC_006151.1 + 26120 0.72 0.380119
Target:  5'- cCCAUcccacUCCCCUCuCCCUCCaccguCUCCACc -3'
miRNA:   3'- uGGUAa----AGGGGAG-GGGAGGc----GAGGUG- -5'
29621 3' -59.2 NC_006151.1 + 26085 0.72 0.380119
Target:  5'- cCCAUcccacUCCCCUCuCCCUCCaccguCUCCACc -3'
miRNA:   3'- uGGUAa----AGGGGAG-GGGAGGc----GAGGUG- -5'
29621 3' -59.2 NC_006151.1 + 25841 0.72 0.380119
Target:  5'- cCCAUcccacUCCCCUCuCCCUCCaccguCUCCACc -3'
miRNA:   3'- uGGUAa----AGGGGAG-GGGAGGc----GAGGUG- -5'
29621 3' -59.2 NC_006151.1 + 26015 0.72 0.380119
Target:  5'- cCCAUcccacUCCCCUCuCCCUCCaccguCUCCACc -3'
miRNA:   3'- uGGUAa----AGGGGAG-GGGAGGc----GAGGUG- -5'
29621 3' -59.2 NC_006151.1 + 9660 0.72 0.380119
Target:  5'- cGCCccgcgcUUCCCCUucccgcuucCCCCUCCGCccggCCGCg -3'
miRNA:   3'- -UGGua----AAGGGGA---------GGGGAGGCGa---GGUG- -5'
29621 3' -59.2 NC_006151.1 + 25771 0.72 0.380119
Target:  5'- cCCAUcccacUCCCCUCuCCCUCCaccguCUCCACc -3'
miRNA:   3'- uGGUAa----AGGGGAG-GGGAGGc----GAGGUG- -5'
29621 3' -59.2 NC_006151.1 + 25911 0.72 0.380119
Target:  5'- cCCAUcccacUCCCCUCuCCCUCCaccguCUCCACc -3'
miRNA:   3'- uGGUAa----AGGGGAG-GGGAGGc----GAGGUG- -5'
29621 3' -59.2 NC_006151.1 + 26050 0.72 0.380119
Target:  5'- cCCAUcccacUCCCCUCuCCCUCCaccguCUCCACc -3'
miRNA:   3'- uGGUAa----AGGGGAG-GGGAGGc----GAGGUG- -5'
29621 3' -59.2 NC_006151.1 + 25876 0.72 0.380119
Target:  5'- cCCAUcccacUCCCCUCuCCCUCCaccguCUCCACc -3'
miRNA:   3'- uGGUAa----AGGGGAG-GGGAGGc----GAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.