Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29621 | 3' | -59.2 | NC_006151.1 | + | 127098 | 0.78 | 0.189044 |
Target: 5'- cCCuccgUCCCuCUCCCCUCCGUcCCGCg -3' miRNA: 3'- uGGuaa-AGGG-GAGGGGAGGCGaGGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 40330 | 0.66 | 0.74336 |
Target: 5'- uCCGUcuucucUCCCCUCgCCCUCgGC-CCGg -3' miRNA: 3'- uGGUAa-----AGGGGAG-GGGAGgCGaGGUg -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 47090 | 0.66 | 0.74336 |
Target: 5'- cCCGg--CCCCgcacUCaCCUCCGCUCCuGCu -3' miRNA: 3'- uGGUaaaGGGGa---GG-GGAGGCGAGG-UG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 11615 | 0.66 | 0.74336 |
Target: 5'- gGCCAUcaacCCCCUCCCCcacCCaC-CCGCa -3' miRNA: 3'- -UGGUAaa--GGGGAGGGGa--GGcGaGGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 31345 | 0.66 | 0.733713 |
Target: 5'- cGCCGUgggCCCgaCCCCggUCCGCgCCGg -3' miRNA: 3'- -UGGUAaa-GGGgaGGGG--AGGCGaGGUg -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 109934 | 0.66 | 0.733713 |
Target: 5'- cGCCGg--CCUCUCCCCUgggcggccucggCCGCgucuggcCCACc -3' miRNA: 3'- -UGGUaaaGGGGAGGGGA------------GGCGa------GGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 47909 | 0.66 | 0.733713 |
Target: 5'- cGCCucgaugcgCCCCaucgcgCCCCguUCCGCUUCGCc -3' miRNA: 3'- -UGGuaaa----GGGGa-----GGGG--AGGCGAGGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 14780 | 0.66 | 0.733713 |
Target: 5'- cACCA---CCCCgccgaCCCC-CCGCUCgACc -3' miRNA: 3'- -UGGUaaaGGGGa----GGGGaGGCGAGgUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 26539 | 0.66 | 0.733713 |
Target: 5'- uUCAUcUUCCCCgUCCCCgCCGUcgUCCGa -3' miRNA: 3'- uGGUA-AAGGGG-AGGGGaGGCG--AGGUg -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 1710 | 0.66 | 0.752912 |
Target: 5'- cGCCGcUUCCaCCaccgccgCCaCCUCCGCcgCCGCc -3' miRNA: 3'- -UGGUaAAGG-GGa------GG-GGAGGCGa-GGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 69490 | 0.66 | 0.752912 |
Target: 5'- cGCCucgagcgCCCCcgcgccgCCuCCUCCGCcgCCGCg -3' miRNA: 3'- -UGGuaaa---GGGGa------GG-GGAGGCGa-GGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 94661 | 0.66 | 0.752912 |
Target: 5'- gGCCAgcgggugCCCggcgggcagCUCCCCgaaggCCGCggCCACg -3' miRNA: 3'- -UGGUaaa----GGG---------GAGGGGa----GGCGa-GGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 61419 | 0.66 | 0.771694 |
Target: 5'- cGCCGUccUCCUCggCCCCgCCGCggcgcCCGCc -3' miRNA: 3'- -UGGUAa-AGGGGa-GGGGaGGCGa----GGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 58540 | 0.66 | 0.770766 |
Target: 5'- cGCCGcccUCCCCggucgucUCCUCUUCGCcgCCGCc -3' miRNA: 3'- -UGGUaa-AGGGG-------AGGGGAGGCGa-GGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 40481 | 0.66 | 0.762359 |
Target: 5'- gGCCc--UCCuCCUCUCCUUCucCUCCGCg -3' miRNA: 3'- -UGGuaaAGG-GGAGGGGAGGc-GAGGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 11563 | 0.66 | 0.762359 |
Target: 5'- cCCGg--CCCCgacaCCCCcCCGC-CCGCc -3' miRNA: 3'- uGGUaaaGGGGa---GGGGaGGCGaGGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 112720 | 0.66 | 0.762359 |
Target: 5'- cGCCAaggCCCUggccugCCCC-CCGUgcgCCACg -3' miRNA: 3'- -UGGUaaaGGGGa-----GGGGaGGCGa--GGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 124610 | 0.66 | 0.762359 |
Target: 5'- uCCGUguaCCCCUacgaCUCCUUCGCccugUCCACg -3' miRNA: 3'- uGGUAaa-GGGGA----GGGGAGGCG----AGGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 43079 | 0.66 | 0.752912 |
Target: 5'- cGCCGcgugUCCgCUCCCCcCCGUgUCGCg -3' miRNA: 3'- -UGGUaa--AGGgGAGGGGaGGCGaGGUG- -5' |
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29621 | 3' | -59.2 | NC_006151.1 | + | 36990 | 0.66 | 0.752912 |
Target: 5'- cCCGg--CCCgCUCgCCCUCCGCcCCcCg -3' miRNA: 3'- uGGUaaaGGG-GAG-GGGAGGCGaGGuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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