miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29621 3' -59.2 NC_006151.1 + 891 0.71 0.448953
Target:  5'- cACCGccUUUCCCUCCCCUCCaCgacgaCCACc -3'
miRNA:   3'- -UGGUa-AAGGGGAGGGGAGGcGa----GGUG- -5'
29621 3' -59.2 NC_006151.1 + 1710 0.66 0.752912
Target:  5'- cGCCGcUUCCaCCaccgccgCCaCCUCCGCcgCCGCc -3'
miRNA:   3'- -UGGUaAAGG-GGa------GG-GGAGGCGa-GGUG- -5'
29621 3' -59.2 NC_006151.1 + 7856 0.67 0.704291
Target:  5'- cACCcac-CCCCUCCUCUCC-C-CCACc -3'
miRNA:   3'- -UGGuaaaGGGGAGGGGAGGcGaGGUG- -5'
29621 3' -59.2 NC_006151.1 + 8223 0.67 0.714169
Target:  5'- gGCCGggUCCCCUUCCCggcggggagggCCGggCCGg -3'
miRNA:   3'- -UGGUaaAGGGGAGGGGa----------GGCgaGGUg -5'
29621 3' -59.2 NC_006151.1 + 8781 0.67 0.681359
Target:  5'- cGCCuccuccUUCUCCUCCUCUCuCGCcucuccucucucucUCCGCg -3'
miRNA:   3'- -UGGua----AAGGGGAGGGGAG-GCG--------------AGGUG- -5'
29621 3' -59.2 NC_006151.1 + 8906 0.67 0.694353
Target:  5'- uCCGUcuccUCUCCUCCUCUCCuCUCCcCg -3'
miRNA:   3'- uGGUAa---AGGGGAGGGGAGGcGAGGuG- -5'
29621 3' -59.2 NC_006151.1 + 9014 0.67 0.684364
Target:  5'- cACCcUUcCCCCggacCCCCUCCcGC-CCGCc -3'
miRNA:   3'- -UGGuAAaGGGGa---GGGGAGG-CGaGGUG- -5'
29621 3' -59.2 NC_006151.1 + 9155 0.68 0.603625
Target:  5'- cCCAgaccUUCCUCUCCCCccuccaCCGC-CCGCc -3'
miRNA:   3'- uGGUa---AAGGGGAGGGGa-----GGCGaGGUG- -5'
29621 3' -59.2 NC_006151.1 + 9660 0.72 0.380119
Target:  5'- cGCCccgcgcUUCCCCUucccgcuucCCCCUCCGCccggCCGCg -3'
miRNA:   3'- -UGGua----AAGGGGA---------GGGGAGGCGa---GGUG- -5'
29621 3' -59.2 NC_006151.1 + 11281 0.68 0.623836
Target:  5'- cCCG--UCCCCgUCCCCgucccCCGC-CCGCu -3'
miRNA:   3'- uGGUaaAGGGG-AGGGGa----GGCGaGGUG- -5'
29621 3' -59.2 NC_006151.1 + 11385 0.75 0.265062
Target:  5'- cGCCucUUCCCCcCUCCUCCGCcgCCGCc -3'
miRNA:   3'- -UGGuaAAGGGGaGGGGAGGCGa-GGUG- -5'
29621 3' -59.2 NC_006151.1 + 11413 0.74 0.311581
Target:  5'- cGCCAguccUCCUcgCUCCUCUCCGC-CCACg -3'
miRNA:   3'- -UGGUaa--AGGG--GAGGGGAGGCGaGGUG- -5'
29621 3' -59.2 NC_006151.1 + 11563 0.66 0.762359
Target:  5'- cCCGg--CCCCgacaCCCCcCCGC-CCGCc -3'
miRNA:   3'- uGGUaaaGGGGa---GGGGaGGCGaGGUG- -5'
29621 3' -59.2 NC_006151.1 + 11615 0.66 0.74336
Target:  5'- gGCCAUcaacCCCCUCCCCcacCCaC-CCGCa -3'
miRNA:   3'- -UGGUAaa--GGGGAGGGGa--GGcGaGGUG- -5'
29621 3' -59.2 NC_006151.1 + 11970 0.7 0.522189
Target:  5'- cACCAcaauacacaCCCUCCCC-CCGCgCCGCu -3'
miRNA:   3'- -UGGUaaag-----GGGAGGGGaGGCGaGGUG- -5'
29621 3' -59.2 NC_006151.1 + 12460 0.74 0.29092
Target:  5'- cACCAccaCCCCUCCCCUCCcuCUCCu- -3'
miRNA:   3'- -UGGUaaaGGGGAGGGGAGGc-GAGGug -5'
29621 3' -59.2 NC_006151.1 + 12620 0.67 0.704291
Target:  5'- cCCAUUUCCCCcacccccaauUCCCCcacUCCuC-CCACa -3'
miRNA:   3'- uGGUAAAGGGG----------AGGGG---AGGcGaGGUG- -5'
29621 3' -59.2 NC_006151.1 + 12784 0.72 0.396659
Target:  5'- cGCCcUUUCCUCUCCCggcgcgcccgCUCC-CUCCGCg -3'
miRNA:   3'- -UGGuAAAGGGGAGGG----------GAGGcGAGGUG- -5'
29621 3' -59.2 NC_006151.1 + 12823 0.69 0.553579
Target:  5'- cCCuc-UCCCCgccgCCCC-CCGCggCCACa -3'
miRNA:   3'- uGGuaaAGGGGa---GGGGaGGCGa-GGUG- -5'
29621 3' -59.2 NC_006151.1 + 12874 0.67 0.684364
Target:  5'- cGCCucuccucUCCUCUCCCCccaucCCGCcCCGCu -3'
miRNA:   3'- -UGGuaa----AGGGGAGGGGa----GGCGaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.