miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29621 5' -51.6 NC_006151.1 + 130946 0.66 0.984055
Target:  5'- gCGGCggggggUCGCGCGGGcGcGGggGc---- -3'
miRNA:   3'- -GUCGa-----AGCGCGCCC-CuCCuuUuauua -5'
29621 5' -51.6 NC_006151.1 + 30866 0.66 0.984055
Target:  5'- gCGGCggCG-GCGGaGGAGGggGGa--- -3'
miRNA:   3'- -GUCGaaGCgCGCC-CCUCCuuUUauua -5'
29621 5' -51.6 NC_006151.1 + 10439 0.66 0.984055
Target:  5'- aGGC--CG-GCGGGGAGGGAGGa--- -3'
miRNA:   3'- gUCGaaGCgCGCCCCUCCUUUUauua -5'
29621 5' -51.6 NC_006151.1 + 49519 0.66 0.984055
Target:  5'- cCGGCggaggaCGaggaGgGGGGAGGggGGUGGg -3'
miRNA:   3'- -GUCGaa----GCg---CgCCCCUCCuuUUAUUa -5'
29621 5' -51.6 NC_006151.1 + 15709 0.66 0.977439
Target:  5'- gGGCUcggaCGacgGCGGGGAcggGGAAGAUGAa -3'
miRNA:   3'- gUCGAa---GCg--CGCCCCU---CCUUUUAUUa -5'
29621 5' -51.6 NC_006151.1 + 44451 0.66 0.977439
Target:  5'- gAGCUcUCGCGacgcgauGGGGGGuGAGGGUGGa -3'
miRNA:   3'- gUCGA-AGCGCg------CCCCUC-CUUUUAUUa -5'
29621 5' -51.6 NC_006151.1 + 89173 0.66 0.977439
Target:  5'- aGGCgg-GCGCGGGGGucGGggGcgGAg -3'
miRNA:   3'- gUCGaagCGCGCCCCU--CCuuUuaUUa -5'
29621 5' -51.6 NC_006151.1 + 80418 0.66 0.977439
Target:  5'- cCGGUgggaaaugUGUGCGGGGA-GAGAGUGGUg -3'
miRNA:   3'- -GUCGaa------GCGCGCCCCUcCUUUUAUUA- -5'
29621 5' -51.6 NC_006151.1 + 104833 0.66 0.977439
Target:  5'- aCGGCcUCGcCGCGGcGGAGGcgGAc--- -3'
miRNA:   3'- -GUCGaAGC-GCGCC-CCUCCuuUUauua -5'
29621 5' -51.6 NC_006151.1 + 33085 0.67 0.972026
Target:  5'- gGGCgagggCGgGCGGuGGAGGggGGa--- -3'
miRNA:   3'- gUCGaa---GCgCGCC-CCUCCuuUUauua -5'
29621 5' -51.6 NC_006151.1 + 135534 0.67 0.972026
Target:  5'- gCGGCgagCgGgGCGGGGAGGAu------ -3'
miRNA:   3'- -GUCGaa-G-CgCGCCCCUCCUuuuauua -5'
29621 5' -51.6 NC_006151.1 + 32362 0.67 0.972026
Target:  5'- gGGCUUucuucccggacCGC-CGGGGAGGAAGc---- -3'
miRNA:   3'- gUCGAA-----------GCGcGCCCCUCCUUUuauua -5'
29621 5' -51.6 NC_006151.1 + 23000 0.67 0.968993
Target:  5'- uCGGC--CGCGCGGGuGGGGGcgcggGGGUGGUg -3'
miRNA:   3'- -GUCGaaGCGCGCCC-CUCCU-----UUUAUUA- -5'
29621 5' -51.6 NC_006151.1 + 121906 0.67 0.968993
Target:  5'- -cGCguaCGCGCGGGccGAGGggGAc--- -3'
miRNA:   3'- guCGaa-GCGCGCCC--CUCCuuUUauua -5'
29621 5' -51.6 NC_006151.1 + 41360 0.67 0.968993
Target:  5'- uGGUcgUCGUGgaGGGGAGGGAAAg--- -3'
miRNA:   3'- gUCGa-AGCGCg-CCCCUCCUUUUauua -5'
29621 5' -51.6 NC_006151.1 + 104012 0.67 0.965734
Target:  5'- aGGCgcgcCGCGCGGcGGAGGugGAg--- -3'
miRNA:   3'- gUCGaa--GCGCGCC-CCUCCuuUUauua -5'
29621 5' -51.6 NC_006151.1 + 41296 0.67 0.965395
Target:  5'- aAGUgugUGCGUgagggggGGGGGGGggGGUGGUg -3'
miRNA:   3'- gUCGaa-GCGCG-------CCCCUCCuuUUAUUA- -5'
29621 5' -51.6 NC_006151.1 + 76664 0.67 0.964711
Target:  5'- gGGCgcgugUGCGCGgucgcuggggagcaGGGGGGAGAGUGGc -3'
miRNA:   3'- gUCGaa---GCGCGC--------------CCCUCCUUUUAUUa -5'
29621 5' -51.6 NC_006151.1 + 63511 0.67 0.962241
Target:  5'- aGGUgggggCGCGCGGGGcggucgGGGAAGAc--- -3'
miRNA:   3'- gUCGaa---GCGCGCCCC------UCCUUUUauua -5'
29621 5' -51.6 NC_006151.1 + 11768 0.68 0.950299
Target:  5'- gAGCgugCGCGaaGGGGGGAGAGg--- -3'
miRNA:   3'- gUCGaa-GCGCgcCCCUCCUUUUauua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.