Results 1 - 20 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29622 | 3' | -58.3 | NC_006151.1 | + | 80166 | 0.66 | 0.776033 |
Target: 5'- cGgUGGGAGagagGGcGGugGGAgagagggcGGugGGAGa -3' miRNA: 3'- -CgACCCUCa---CC-CCugCCU--------UCugCCUU- -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 11732 | 0.66 | 0.803135 |
Target: 5'- --gGGGAGcGGGGGugaGGggGAgGGGu -3' miRNA: 3'- cgaCCCUCaCCCCUg--CCuuCUgCCUu -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 41500 | 0.66 | 0.794242 |
Target: 5'- cGCgagGGGAGccaaUGGGG-CGGgcGccGCGGAGc -3' miRNA: 3'- -CGa--CCCUC----ACCCCuGCCuuC--UGCCUU- -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 16637 | 0.66 | 0.794242 |
Target: 5'- --gGGGAGUccgGGGGAgucCGGggGAgucCGGGGg -3' miRNA: 3'- cgaCCCUCA---CCCCU---GCCuuCU---GCCUU- -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 16597 | 0.66 | 0.794242 |
Target: 5'- --gGGGAGUccgGGGGAgucCGGggGAgucCGGGGg -3' miRNA: 3'- cgaCCCUCA---CCCCU---GCCuuCU---GCCUU- -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 44272 | 0.66 | 0.785205 |
Target: 5'- uGgaGGGAGcGGGGaaauGCGGAacAGGgGGGAa -3' miRNA: 3'- -CgaCCCUCaCCCC----UGCCU--UCUgCCUU- -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 33044 | 0.66 | 0.784294 |
Target: 5'- --gGGGAGggGGGGaugcugccGCGGGuggcaugAGACGGAGg -3' miRNA: 3'- cgaCCCUCa-CCCC--------UGCCU-------UCUGCCUU- -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 72597 | 0.66 | 0.776033 |
Target: 5'- --gGGuGAG-GGGGGgGGcAGGGCGGAGa -3' miRNA: 3'- cgaCC-CUCaCCCCUgCC-UUCUGCCUU- -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 80211 | 0.66 | 0.776033 |
Target: 5'- cGgUGGGAGagagGGcGGugGGAgagagggcGGugGGAGa -3' miRNA: 3'- -CgACCCUCa---CC-CCugCCU--------UCugCCUU- -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 44312 | 0.66 | 0.803135 |
Target: 5'- uGCgaagGGGAGgggaaGGGGAaaaGGAgaggagggccgcGGACGGGu -3' miRNA: 3'- -CGa---CCCUCa----CCCCUg--CCU------------UCUGCCUu -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 18130 | 0.66 | 0.809271 |
Target: 5'- cGCUGGGGucgaacguguccauGUcggcGGGGGCGGc-GGCGGGc -3' miRNA: 3'- -CGACCCU--------------CA----CCCCUGCCuuCUGCCUu -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 41194 | 0.66 | 0.811877 |
Target: 5'- --gGGGGGUGGGGGgGGAaagagAGAaaGAGa -3' miRNA: 3'- cgaCCCUCACCCCUgCCU-----UCUgcCUU- -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 78652 | 0.66 | 0.820458 |
Target: 5'- aGCUGGugGAGgcggccGGGGcGCGGGugcuGGACGGGc -3' miRNA: 3'- -CGACC--CUCa-----CCCC-UGCCU----UCUGCCUu -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 41309 | 0.66 | 0.820458 |
Target: 5'- --aGGGGG-GGGGGgGGggGugGuGGu -3' miRNA: 3'- cgaCCCUCaCCCCUgCCuuCugC-CUu -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 34396 | 0.66 | 0.820458 |
Target: 5'- --aGaGGGGUGGGGGagaggaGGggGugGGu- -3' miRNA: 3'- cgaC-CCUCACCCCUg-----CCuuCugCCuu -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 5487 | 0.66 | 0.820458 |
Target: 5'- aGUU-GGAGuUGGGGuuGGAggAGACGGGg -3' miRNA: 3'- -CGAcCCUC-ACCCCugCCU--UCUGCCUu -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 96710 | 0.66 | 0.811877 |
Target: 5'- cGCcGGGGGcggcGGcGGACGaGGAGGCGGc- -3' miRNA: 3'- -CGaCCCUCa---CC-CCUGC-CUUCUGCCuu -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 121554 | 0.66 | 0.811877 |
Target: 5'- --gGGGAGgaggaGGGGAa-GggGACGGGc -3' miRNA: 3'- cgaCCCUCa----CCCCUgcCuuCUGCCUu -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 110633 | 0.66 | 0.811877 |
Target: 5'- cUUGGGGGgacuuggGGGGACuugGGggGACuuGGGGg -3' miRNA: 3'- cGACCCUCa------CCCCUG---CCuuCUG--CCUU- -5' |
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29622 | 3' | -58.3 | NC_006151.1 | + | 110593 | 0.66 | 0.811877 |
Target: 5'- cUUGGGGGgacuuggGGGGACuugGGggGACuuGGGGg -3' miRNA: 3'- cGACCCUCa------CCCCUG---CCuuCUG--CCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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