miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29622 3' -58.3 NC_006151.1 + 835 1.08 0.002003
Target:  5'- gGCUGGGAGUGGGGACGGAAGACGGAAg -3'
miRNA:   3'- -CGACCCUCACCCCUGCCUUCUGCCUU- -5'
29622 3' -58.3 NC_006151.1 + 5038 0.67 0.757318
Target:  5'- gGCcgGGGAGgccgcGGcGGAgGaGGAGGCGGAGg -3'
miRNA:   3'- -CGa-CCCUCa----CC-CCUgC-CUUCUGCCUU- -5'
29622 3' -58.3 NC_006151.1 + 5251 0.74 0.367056
Target:  5'- gGCggcGGGGGcccgGGGGGCGGAGGGCGa-- -3'
miRNA:   3'- -CGa--CCCUCa---CCCCUGCCUUCUGCcuu -5'
29622 3' -58.3 NC_006151.1 + 5487 0.66 0.820458
Target:  5'- aGUU-GGAGuUGGGGuuGGAggAGACGGGg -3'
miRNA:   3'- -CGAcCCUC-ACCCCugCCU--UCUGCCUu -5'
29622 3' -58.3 NC_006151.1 + 8050 0.67 0.757318
Target:  5'- --aGGGAGUuggGGGGAgGGGAgccaagauggcGACGGGg -3'
miRNA:   3'- cgaCCCUCA---CCCCUgCCUU-----------CUGCCUu -5'
29622 3' -58.3 NC_006151.1 + 8108 0.7 0.567742
Target:  5'- --gGGGAGgggGGGGGuCGGAGcGCGGAc -3'
miRNA:   3'- cgaCCCUCa--CCCCU-GCCUUcUGCCUu -5'
29622 3' -58.3 NC_006151.1 + 9508 0.73 0.399915
Target:  5'- aGCgGGGcguGUGGGGAaGGAAGAgGGGAc -3'
miRNA:   3'- -CGaCCCu--CACCCCUgCCUUCUgCCUU- -5'
29622 3' -58.3 NC_006151.1 + 9932 0.68 0.678833
Target:  5'- cCUcGGAGaUGGGGACGcGGAGAaGGAAa -3'
miRNA:   3'- cGAcCCUC-ACCCCUGC-CUUCUgCCUU- -5'
29622 3' -58.3 NC_006151.1 + 10357 0.67 0.728455
Target:  5'- cGC-GGGAGgggaGGGGAgGGAGGGgaGGGGg -3'
miRNA:   3'- -CGaCCCUCa---CCCCUgCCUUCUg-CCUU- -5'
29622 3' -58.3 NC_006151.1 + 10397 0.69 0.648538
Target:  5'- --aGGGAG-GGGGGgGGAGaGCGGGGu -3'
miRNA:   3'- cgaCCCUCaCCCCUgCCUUcUGCCUU- -5'
29622 3' -58.3 NC_006151.1 + 11732 0.66 0.803135
Target:  5'- --gGGGAGcGGGGGugaGGggGAgGGGu -3'
miRNA:   3'- cgaCCCUCaCCCCUg--CCuuCUgCCUu -5'
29622 3' -58.3 NC_006151.1 + 11808 0.7 0.587808
Target:  5'- --gGcGGGGUGGGGugGGggGcgGCGGc- -3'
miRNA:   3'- cgaC-CCUCACCCCugCCuuC--UGCCuu -5'
29622 3' -58.3 NC_006151.1 + 14471 0.71 0.53799
Target:  5'- gGUUGGGcgGGUGGgcggguGGGCGGggGuCGGGAg -3'
miRNA:   3'- -CGACCC--UCACC------CCUGCCuuCuGCCUU- -5'
29622 3' -58.3 NC_006151.1 + 15803 0.69 0.597892
Target:  5'- --gGGGAGgacGGGGG-GGAAGACGGc- -3'
miRNA:   3'- cgaCCCUCa--CCCCUgCCUUCUGCCuu -5'
29622 3' -58.3 NC_006151.1 + 16120 0.72 0.443532
Target:  5'- -aUGGGGGUGGaGACGGuGGAgGGAGa -3'
miRNA:   3'- cgACCCUCACCcCUGCCuUCUgCCUU- -5'
29622 3' -58.3 NC_006151.1 + 16146 0.69 0.618127
Target:  5'- --gGGGAGUGGGaugggguggaGACGGuGGAgGGAGa -3'
miRNA:   3'- cgaCCCUCACCC----------CUGCCuUCUgCCUU- -5'
29622 3' -58.3 NC_006151.1 + 16181 0.69 0.618127
Target:  5'- --gGGGAGUGGGaugggguggaGACGGuGGAgGGAGa -3'
miRNA:   3'- cgaCCCUCACCC----------CUGCCuUCUgCCUU- -5'
29622 3' -58.3 NC_006151.1 + 16216 0.69 0.618127
Target:  5'- --gGGGAGUGGGaugggguggaGACGGuGGAgGGAGa -3'
miRNA:   3'- cgaCCCUCACCC----------CUGCCuUCUgCCUU- -5'
29622 3' -58.3 NC_006151.1 + 16251 0.69 0.618127
Target:  5'- --gGGGAGUGGGaugggguggaGACGGuGGAgGGAGa -3'
miRNA:   3'- cgaCCCUCACCC----------CUGCCuUCUgCCUU- -5'
29622 3' -58.3 NC_006151.1 + 16286 0.69 0.618127
Target:  5'- --gGGGAGUGGGaugggguggaGACGGuGGAgGGAGa -3'
miRNA:   3'- cgaCCCUCACCC----------CUGCCuUCUgCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.