miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29622 3' -58.3 NC_006151.1 + 835 1.08 0.002003
Target:  5'- gGCUGGGAGUGGGGACGGAAGACGGAAg -3'
miRNA:   3'- -CGACCCUCACCCCUGCCUUCUGCCUU- -5'
29622 3' -58.3 NC_006151.1 + 45324 0.79 0.168214
Target:  5'- gGCUGGGAggGUGGcGG-UGGAGGACGGGAg -3'
miRNA:   3'- -CGACCCU--CACC-CCuGCCUUCUGCCUU- -5'
29622 3' -58.3 NC_006151.1 + 49532 0.78 0.195314
Target:  5'- aGgaGGGGGgaggGGGGugGGAuGGACGGAGg -3'
miRNA:   3'- -CgaCCCUCa---CCCCugCCU-UCUGCCUU- -5'
29622 3' -58.3 NC_006151.1 + 127923 0.78 0.21544
Target:  5'- --gGGGAGcGGGGGCGGcGAGACGGGc -3'
miRNA:   3'- cgaCCCUCaCCCCUGCC-UUCUGCCUu -5'
29622 3' -58.3 NC_006151.1 + 43729 0.77 0.24307
Target:  5'- --gGGGAcgGUGGGGGCGGGggAGACGGGc -3'
miRNA:   3'- cgaCCCU--CACCCCUGCCU--UCUGCCUu -5'
29622 3' -58.3 NC_006151.1 + 27298 0.77 0.248938
Target:  5'- cGCuUGGGGGgcgugGGGGucgagGCGGggGACGGGGg -3'
miRNA:   3'- -CG-ACCCUCa----CCCC-----UGCCuuCUGCCUU- -5'
29622 3' -58.3 NC_006151.1 + 45107 0.76 0.261025
Target:  5'- -aUGGGGucGUGccguGGGACGGGAGGCGGAAa -3'
miRNA:   3'- cgACCCU--CAC----CCCUGCCUUCUGCCUU- -5'
29622 3' -58.3 NC_006151.1 + 34348 0.76 0.280045
Target:  5'- uCUGGGGcgugucucGUGGGGugGGAGGGgGGAc -3'
miRNA:   3'- cGACCCU--------CACCCCugCCUUCUgCCUu -5'
29622 3' -58.3 NC_006151.1 + 71551 0.76 0.286626
Target:  5'- uGCgaGGGAGggGGGGGCgaGGggGACGGGc -3'
miRNA:   3'- -CGa-CCCUCa-CCCCUG--CCuuCUGCCUu -5'
29622 3' -58.3 NC_006151.1 + 29355 0.75 0.293328
Target:  5'- --gGGGAGaGGGGGCGGGgagcgGGGCGGGAu -3'
miRNA:   3'- cgaCCCUCaCCCCUGCCU-----UCUGCCUU- -5'
29622 3' -58.3 NC_006151.1 + 89180 0.75 0.328667
Target:  5'- cGC-GGGGGUcGGGGGCGGAgaGGGCGaGAGu -3'
miRNA:   3'- -CGaCCCUCA-CCCCUGCCU--UCUGC-CUU- -5'
29622 3' -58.3 NC_006151.1 + 27949 0.74 0.343659
Target:  5'- cGC-GcGGGGUGGGGAgGGAggggGGACGGGGa -3'
miRNA:   3'- -CGaC-CCUCACCCCUgCCU----UCUGCCUU- -5'
29622 3' -58.3 NC_006151.1 + 29617 0.74 0.359136
Target:  5'- gGCUGgugugggaGGAGUGGGGGaauUGGggGugGGGGa -3'
miRNA:   3'- -CGAC--------CCUCACCCCU---GCCuuCugCCUU- -5'
29622 3' -58.3 NC_006151.1 + 5251 0.74 0.367056
Target:  5'- gGCggcGGGGGcccgGGGGGCGGAGGGCGa-- -3'
miRNA:   3'- -CGa--CCCUCa---CCCCUGCCUUCUGCcuu -5'
29622 3' -58.3 NC_006151.1 + 27643 0.74 0.367056
Target:  5'- gGgUGGGGGUGGcuGGAUGGAuuGGAUGGAu -3'
miRNA:   3'- -CgACCCUCACC--CCUGCCU--UCUGCCUu -5'
29622 3' -58.3 NC_006151.1 + 72566 0.74 0.375095
Target:  5'- cGCgGGaGGGUGGGGGCGGguGACaGAGu -3'
miRNA:   3'- -CGaCC-CUCACCCCUGCCuuCUGcCUU- -5'
29622 3' -58.3 NC_006151.1 + 30971 0.74 0.375095
Target:  5'- aGCgggcGGGGGacGGGGACGG-GGACGGGGa -3'
miRNA:   3'- -CGa---CCCUCa-CCCCUGCCuUCUGCCUU- -5'
29622 3' -58.3 NC_006151.1 + 9508 0.73 0.399915
Target:  5'- aGCgGGGcguGUGGGGAaGGAAGAgGGGAc -3'
miRNA:   3'- -CGaCCCu--CACCCCUgCCUUCUgCCUU- -5'
29622 3' -58.3 NC_006151.1 + 29661 0.73 0.417035
Target:  5'- --gGGGAGgaggaaGGGGGgGGggGGCGGGGu -3'
miRNA:   3'- cgaCCCUCa-----CCCCUgCCuuCUGCCUU- -5'
29622 3' -58.3 NC_006151.1 + 27530 0.73 0.417035
Target:  5'- gGCgUGGGGGgggGGGGGgGGggGGgGGGGg -3'
miRNA:   3'- -CG-ACCCUCa--CCCCUgCCuuCUgCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.