miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29623 3' -58.7 NC_006151.1 + 1482 1.06 0.002093
Target:  5'- cUCCACCCCAGAGACCACCGCCAAGAUg -3'
miRNA:   3'- -AGGUGGGGUCUCUGGUGGCGGUUCUA- -5'
29623 3' -58.7 NC_006151.1 + 46827 0.78 0.178629
Target:  5'- cUCUGCCCCcGAGACCGCCGCCccccGGGg -3'
miRNA:   3'- -AGGUGGGGuCUCUGGUGGCGGu---UCUa -5'
29623 3' -58.7 NC_006151.1 + 66894 0.77 0.21776
Target:  5'- cCCGCgCCGGAGGaCGCCGCCGAGGa -3'
miRNA:   3'- aGGUGgGGUCUCUgGUGGCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 80803 0.76 0.239949
Target:  5'- gCCGCCCCcacgacGGAGGCCACCacguagGCCGGGAc -3'
miRNA:   3'- aGGUGGGG------UCUCUGGUGG------CGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 109226 0.75 0.289957
Target:  5'- cCCGCCCCGGcgcAGACCcaGCCGCCGcGGUc -3'
miRNA:   3'- aGGUGGGGUC---UCUGG--UGGCGGUuCUA- -5'
29623 3' -58.7 NC_006151.1 + 45777 0.74 0.303672
Target:  5'- aCCGCCCCAGAagccccucGCCACCGCCGc--- -3'
miRNA:   3'- aGGUGGGGUCUc-------UGGUGGCGGUucua -5'
29623 3' -58.7 NC_006151.1 + 51286 0.74 0.310715
Target:  5'- -gCGCCCuCGGGGGCCGCCGgCCAGGu- -3'
miRNA:   3'- agGUGGG-GUCUCUGGUGGC-GGUUCua -5'
29623 3' -58.7 NC_006151.1 + 109091 0.74 0.325171
Target:  5'- gUCgGCCCCGGAGGCCcagugaggcgaGCCGCCGGc-- -3'
miRNA:   3'- -AGgUGGGGUCUCUGG-----------UGGCGGUUcua -5'
29623 3' -58.7 NC_006151.1 + 44020 0.74 0.332584
Target:  5'- cCCGCCCCgcGGGGAgCCgGCCGUCGAGAa -3'
miRNA:   3'- aGGUGGGG--UCUCU-GG-UGGCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 39574 0.73 0.363466
Target:  5'- -gCACCCCGGGGccgagccgcugcGCCucuGCCGCCAGGAc -3'
miRNA:   3'- agGUGGGGUCUC------------UGG---UGGCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 13951 0.73 0.371491
Target:  5'- -gCGCCCCGGGGACgCGCCgGCCAugggGGAg -3'
miRNA:   3'- agGUGGGGUCUCUG-GUGG-CGGU----UCUa -5'
29623 3' -58.7 NC_006151.1 + 107926 0.73 0.379635
Target:  5'- cCCaACCCCAGGGucccCCACCGCCGc--- -3'
miRNA:   3'- aGG-UGGGGUCUCu---GGUGGCGGUucua -5'
29623 3' -58.7 NC_006151.1 + 118016 0.73 0.387067
Target:  5'- cUCACCCgcgacgaUGGAGGCCGCgGCCAAGAc -3'
miRNA:   3'- aGGUGGG-------GUCUCUGGUGgCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 13389 0.72 0.430941
Target:  5'- cCCGCCuCCGGGGACgCGCCgGCCAauGGGg -3'
miRNA:   3'- aGGUGG-GGUCUCUG-GUGG-CGGU--UCUa -5'
29623 3' -58.7 NC_006151.1 + 50781 0.71 0.455317
Target:  5'- gCCGCCCCGacgccccagcugccGAGACC-CCGCCAGc-- -3'
miRNA:   3'- aGGUGGGGU--------------CUCUGGuGGCGGUUcua -5'
29623 3' -58.7 NC_006151.1 + 13670 0.71 0.458071
Target:  5'- cCCGCCuCCGGGGACgCGCCgGCCAAu-- -3'
miRNA:   3'- aGGUGG-GGUCUCUG-GUGG-CGGUUcua -5'
29623 3' -58.7 NC_006151.1 + 79687 0.71 0.467316
Target:  5'- gCCGCCgCGGGGACCGCaGCCGAa-- -3'
miRNA:   3'- aGGUGGgGUCUCUGGUGgCGGUUcua -5'
29623 3' -58.7 NC_006151.1 + 6288 0.71 0.467316
Target:  5'- cUCgGCCgCGGcGGCgGCCGCCAGGAg -3'
miRNA:   3'- -AGgUGGgGUCuCUGgUGGCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 1077 0.71 0.476656
Target:  5'- cCCACCCCccucGACCACCG-CAGGAc -3'
miRNA:   3'- aGGUGGGGucu-CUGGUGGCgGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 7909 0.71 0.486087
Target:  5'- cCCACCCCAcGAGACaCGCC-CCA-GAg -3'
miRNA:   3'- aGGUGGGGU-CUCUG-GUGGcGGUuCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.