Results 21 - 40 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29623 | 3' | -58.7 | NC_006151.1 | + | 114122 | 0.71 | 0.495607 |
Target: 5'- gCUGCCCCAcGuGcGCCGCCGCCGAGc- -3' miRNA: 3'- aGGUGGGGU-CuC-UGGUGGCGGUUCua -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 86962 | 0.7 | 0.50521 |
Target: 5'- cUCgGCCgCCAuGGACCGCCGCCAc--- -3' miRNA: 3'- -AGgUGG-GGUcUCUGGUGGCGGUucua -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 8973 | 0.7 | 0.521714 |
Target: 5'- -gCGCCCCGGGaagggucgggcgauGGCCGCCGCCAc--- -3' miRNA: 3'- agGUGGGGUCU--------------CUGGUGGCGGUucua -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 46539 | 0.7 | 0.534474 |
Target: 5'- gUCCGCggacgaCCAGAGGCCGgCGCCcAGGc -3' miRNA: 3'- -AGGUGg-----GGUCUCUGGUgGCGGuUCUa -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 46157 | 0.7 | 0.544365 |
Target: 5'- cCCGCCCCAGAGuCC-CCGUCu---- -3' miRNA: 3'- aGGUGGGGUCUCuGGuGGCGGuucua -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 87497 | 0.7 | 0.544365 |
Target: 5'- gCCGCCCCcGuucAGGCCGCCGCCc---- -3' miRNA: 3'- aGGUGGGGuC---UCUGGUGGCGGuucua -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 37005 | 0.7 | 0.544365 |
Target: 5'- cUCCGCCCCccGGGcccccGCCGCCGCCGc--- -3' miRNA: 3'- -AGGUGGGGu-CUC-----UGGUGGCGGUucua -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 38575 | 0.7 | 0.544365 |
Target: 5'- gCCGCgcgCCCGGGGcCCGCCGCCccgGGGAc -3' miRNA: 3'- aGGUG---GGGUCUCuGGUGGCGG---UUCUa -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 108036 | 0.7 | 0.554314 |
Target: 5'- gCCACCCCccAGACUcaGCCGCCGAc-- -3' miRNA: 3'- aGGUGGGGucUCUGG--UGGCGGUUcua -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 37880 | 0.7 | 0.554314 |
Target: 5'- cCCGCgCCggGGAGGCgACCGUCGAGGc -3' miRNA: 3'- aGGUGgGG--UCUCUGgUGGCGGUUCUa -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 40039 | 0.69 | 0.564315 |
Target: 5'- gCCGCCgCCGGGGG-CGCCGUgGAGAc -3' miRNA: 3'- aGGUGG-GGUCUCUgGUGGCGgUUCUa -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 79615 | 0.69 | 0.574364 |
Target: 5'- gCCACaaCCCGGAGcGCCGCCGUCGccgcuGGAUc -3' miRNA: 3'- aGGUG--GGGUCUC-UGGUGGCGGU-----UCUA- -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 81920 | 0.69 | 0.584454 |
Target: 5'- gCCGCCUCGGAGaagacgaaggcgGCCA-CGCCGAGGc -3' miRNA: 3'- aGGUGGGGUCUC------------UGGUgGCGGUUCUa -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 91906 | 0.69 | 0.584454 |
Target: 5'- gCCACCgucuggugcgcUCGGAGGCCaucuccacGCCGCCGGGGg -3' miRNA: 3'- aGGUGG-----------GGUCUCUGG--------UGGCGGUUCUa -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 109972 | 0.69 | 0.603713 |
Target: 5'- cCCACCCgGGAGGacuugacCCGcgagcCCGCCGAGGa -3' miRNA: 3'- aGGUGGGgUCUCU-------GGU-----GGCGGUUCUa -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 109378 | 0.69 | 0.604729 |
Target: 5'- uUCCGCCCCcgccgcACCACCGCCGGc-- -3' miRNA: 3'- -AGGUGGGGucuc--UGGUGGCGGUUcua -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 69690 | 0.68 | 0.6149 |
Target: 5'- -gCGCCUCgccgucgauGGuGGCCGCCGCCGGGGg -3' miRNA: 3'- agGUGGGG---------UCuCUGGUGGCGGUUCUa -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 84764 | 0.68 | 0.6149 |
Target: 5'- gCCGCCgaGGAGGCggacgcggcgcgCGCCGCCGAGGa -3' miRNA: 3'- aGGUGGggUCUCUG------------GUGGCGGUUCUa -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 1692 | 0.68 | 0.6149 |
Target: 5'- cUCCGCCgCGGccGCCGCCGCCGc--- -3' miRNA: 3'- -AGGUGGgGUCucUGGUGGCGGUucua -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 82331 | 0.68 | 0.625084 |
Target: 5'- gCCACCuCCGcGGGccacACCGCCGCCGuGGUg -3' miRNA: 3'- aGGUGG-GGU-CUC----UGGUGGCGGUuCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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