miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29623 3' -58.7 NC_006151.1 + 81329 0.66 0.754951
Target:  5'- cUCCGCCCCcucguccGucGCCGCCGCCGcgcccGGGg -3'
miRNA:   3'- -AGGUGGGGu------CucUGGUGGCGGU-----UCUa -5'
29623 3' -58.7 NC_006151.1 + 108324 0.66 0.754951
Target:  5'- cCCGCgCCCGG-GcCCGCCccaucgGCCAAGAa -3'
miRNA:   3'- aGGUG-GGGUCuCuGGUGG------CGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 67028 0.66 0.745353
Target:  5'- -gCugCUCGGGGACCA-CGCCGAGc- -3'
miRNA:   3'- agGugGGGUCUCUGGUgGCGGUUCua -5'
29623 3' -58.7 NC_006151.1 + 107689 0.66 0.745353
Target:  5'- gCCGCCCacaAGaAGcCCGCCGCCGGc-- -3'
miRNA:   3'- aGGUGGGg--UC-UCuGGUGGCGGUUcua -5'
29623 3' -58.7 NC_006151.1 + 111393 0.66 0.745353
Target:  5'- gCCGCCgCCGGc-ACCcCCGCCGGGGc -3'
miRNA:   3'- aGGUGG-GGUCucUGGuGGCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 117911 0.66 0.745353
Target:  5'- cUUCACCCCGccgccGGACCcguCCGCCcGGAg -3'
miRNA:   3'- -AGGUGGGGUc----UCUGGu--GGCGGuUCUa -5'
29623 3' -58.7 NC_006151.1 + 138613 0.66 0.745353
Target:  5'- gCCGCUCgGcGAGGaCGCCGCCGGGGg -3'
miRNA:   3'- aGGUGGGgU-CUCUgGUGGCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 66132 0.66 0.745353
Target:  5'- cUCCACCCgGGcGGCCAgCCGC--AGGUg -3'
miRNA:   3'- -AGGUGGGgUCuCUGGU-GGCGguUCUA- -5'
29623 3' -58.7 NC_006151.1 + 87002 0.66 0.745353
Target:  5'- cCCgaGCCCCGGcc-CC-CCGCCAGGAa -3'
miRNA:   3'- aGG--UGGGGUCucuGGuGGCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 104159 0.66 0.745353
Target:  5'- -aCGCCgCGGAGcugcgccCCGCCGCCGAGc- -3'
miRNA:   3'- agGUGGgGUCUCu------GGUGGCGGUUCua -5'
29623 3' -58.7 NC_006151.1 + 61456 0.66 0.735657
Target:  5'- gUCCGCCgCCAugugcGGGCCGCgcaaCGCCGAGGc -3'
miRNA:   3'- -AGGUGG-GGUc----UCUGGUG----GCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 109783 0.66 0.735657
Target:  5'- aCCACCCCcGAG-CUcCCGCC-GGAg -3'
miRNA:   3'- aGGUGGGGuCUCuGGuGGCGGuUCUa -5'
29623 3' -58.7 NC_006151.1 + 30805 0.66 0.735657
Target:  5'- aUgGCCCCGGGGGCaCGCgGgCGGGAg -3'
miRNA:   3'- aGgUGGGGUCUCUG-GUGgCgGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 38261 0.67 0.725872
Target:  5'- cUUCGCCCCGGccaacguGGCCGCggcccggcuCGCCGAGGc -3'
miRNA:   3'- -AGGUGGGGUCu------CUGGUG---------GCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 134716 0.67 0.725872
Target:  5'- aCCGCCCCGcGuGGCCuuCGCgCGGGAc -3'
miRNA:   3'- aGGUGGGGU-CuCUGGugGCG-GUUCUa -5'
29623 3' -58.7 NC_006151.1 + 87190 0.67 0.725872
Target:  5'- gCCGCCgCAGcuGCUGCCGCCcGGGg -3'
miRNA:   3'- aGGUGGgGUCucUGGUGGCGGuUCUa -5'
29623 3' -58.7 NC_006151.1 + 39094 0.67 0.725872
Target:  5'- gCUGCCCCAcGAGgagcucugcGCCGagcCCGCCGAGGg -3'
miRNA:   3'- aGGUGGGGU-CUC---------UGGU---GGCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 36071 0.67 0.722921
Target:  5'- uUCgGCCCgGGcGGCCucuucuccgacgacGCCGCCGAGGc -3'
miRNA:   3'- -AGgUGGGgUCuCUGG--------------UGGCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 23513 0.67 0.716007
Target:  5'- cUCCACCgaCAGGGAgaCGgUGCCGAGGUa -3'
miRNA:   3'- -AGGUGGg-GUCUCUg-GUgGCGGUUCUA- -5'
29623 3' -58.7 NC_006151.1 + 107569 0.67 0.716007
Target:  5'- gCCaaGCCCgCGGAGcugacucCCGCCGCCAAGc- -3'
miRNA:   3'- aGG--UGGG-GUCUCu------GGUGGCGGUUCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.