Results 21 - 40 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29623 | 3' | -58.7 | NC_006151.1 | + | 46735 | 0.66 | 0.783063 |
Target: 5'- gCCGgCCCGGGGucggcgaacACCGCCGCUucGGc -3' miRNA: 3'- aGGUgGGGUCUC---------UGGUGGCGGuuCUa -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 55772 | 0.66 | 0.783063 |
Target: 5'- gCCACCUCGGcuuccucAUCACCaGCCAGGAg -3' miRNA: 3'- aGGUGGGGUCuc-----UGGUGG-CGGUUCUa -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 107275 | 0.66 | 0.782144 |
Target: 5'- gCCACCUCGGAGgagcuguACgGCCGgCCGAGc- -3' miRNA: 3'- aGGUGGGGUCUC-------UGgUGGC-GGUUCua -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 7264 | 0.66 | 0.773814 |
Target: 5'- cUCGCCCCAcGuGGCCGCCcucgGCCAauGGGg -3' miRNA: 3'- aGGUGGGGU-CuCUGGUGG----CGGU--UCUa -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 6245 | 0.66 | 0.773814 |
Target: 5'- --aGCCCUGGcuGCCGCCGUCGGGGc -3' miRNA: 3'- aggUGGGGUCucUGGUGGCGGUUCUa -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 137401 | 0.66 | 0.773814 |
Target: 5'- gCCugCCCgccGGGGggcgcccucGCCGCCGCCGcgGGGUc -3' miRNA: 3'- aGGugGGG---UCUC---------UGGUGGCGGU--UCUA- -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 103193 | 0.66 | 0.773814 |
Target: 5'- gCCGCCCUGGcGGCCGCC-CCGgacgaGGAg -3' miRNA: 3'- aGGUGGGGUCuCUGGUGGcGGU-----UCUa -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 69291 | 0.66 | 0.764441 |
Target: 5'- -gCGCCaCCAGGGACacggGCCGCCGGc-- -3' miRNA: 3'- agGUGG-GGUCUCUGg---UGGCGGUUcua -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 81393 | 0.66 | 0.764441 |
Target: 5'- gCCGCggcgCCCAGGuuGGCCAggguggcguccCCGCCGAGGUc -3' miRNA: 3'- aGGUG----GGGUCU--CUGGU-----------GGCGGUUCUA- -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 97864 | 0.66 | 0.764441 |
Target: 5'- gUCCGCguuCUCGGcGGCCGCCaCCAGGAa -3' miRNA: 3'- -AGGUG---GGGUCuCUGGUGGcGGUUCUa -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 6216 | 0.66 | 0.764441 |
Target: 5'- aUCCuCgCCGGAGgaGCCGCggCGCCGGGAg -3' miRNA: 3'- -AGGuGgGGUCUC--UGGUG--GCGGUUCUa -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 36705 | 0.66 | 0.764441 |
Target: 5'- cCCugCUCGacGAGcCCGCCGCCGcGAg -3' miRNA: 3'- aGGugGGGU--CUCuGGUGGCGGUuCUa -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 38058 | 0.66 | 0.773814 |
Target: 5'- gCCGCCCUcGGGcCCGCCuGCCucGAg -3' miRNA: 3'- aGGUGGGGuCUCuGGUGG-CGGuuCUa -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 23513 | 0.67 | 0.716007 |
Target: 5'- cUCCACCgaCAGGGAgaCGgUGCCGAGGUa -3' miRNA: 3'- -AGGUGGg-GUCUCUg-GUgGCGGUUCUA- -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 82402 | 0.67 | 0.716007 |
Target: 5'- cUCCGCgCCCGaGGGCgGCC-CCGAGAg -3' miRNA: 3'- -AGGUG-GGGUcUCUGgUGGcGGUUCUa -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 36071 | 0.67 | 0.722921 |
Target: 5'- uUCgGCCCgGGcGGCCucuucuccgacgacGCCGCCGAGGc -3' miRNA: 3'- -AGgUGGGgUCuCUGG--------------UGGCGGUUCUa -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 39094 | 0.67 | 0.725872 |
Target: 5'- gCUGCCCCAcGAGgagcucugcGCCGagcCCGCCGAGGg -3' miRNA: 3'- aGGUGGGGU-CUC---------UGGU---GGCGGUUCUa -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 87190 | 0.67 | 0.725872 |
Target: 5'- gCCGCCgCAGcuGCUGCCGCCcGGGg -3' miRNA: 3'- aGGUGGgGUCucUGGUGGCGGuUCUa -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 134716 | 0.67 | 0.725872 |
Target: 5'- aCCGCCCCGcGuGGCCuuCGCgCGGGAc -3' miRNA: 3'- aGGUGGGGU-CuCUGGugGCG-GUUCUa -5' |
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29623 | 3' | -58.7 | NC_006151.1 | + | 107569 | 0.67 | 0.716007 |
Target: 5'- gCCaaGCCCgCGGAGcugacucCCGCCGCCAAGc- -3' miRNA: 3'- aGG--UGGG-GUCUCu------GGUGGCGGUUCua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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