miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29623 3' -58.7 NC_006151.1 + 30805 0.66 0.735657
Target:  5'- aUgGCCCCGGGGGCaCGCgGgCGGGAg -3'
miRNA:   3'- aGgUGGGGUCUCUG-GUGgCgGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 32238 0.67 0.706071
Target:  5'- cUCCugGCCgCGGcGACCGCCGCCGc--- -3'
miRNA:   3'- -AGG--UGGgGUCuCUGGUGGCGGUucua -5'
29623 3' -58.7 NC_006151.1 + 35900 0.67 0.706071
Target:  5'- --gACCCCGaucGAGACCAUgGCCGAcGAUc -3'
miRNA:   3'- aggUGGGGU---CUCUGGUGgCGGUU-CUA- -5'
29623 3' -58.7 NC_006151.1 + 36071 0.67 0.722921
Target:  5'- uUCgGCCCgGGcGGCCucuucuccgacgacGCCGCCGAGGc -3'
miRNA:   3'- -AGgUGGGgUCuCUGG--------------UGGCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 36705 0.66 0.764441
Target:  5'- cCCugCUCGacGAGcCCGCCGCCGcGAg -3'
miRNA:   3'- aGGugGGGU--CUCuGGUGGCGGUuCUa -5'
29623 3' -58.7 NC_006151.1 + 37005 0.7 0.544365
Target:  5'- cUCCGCCCCccGGGcccccGCCGCCGCCGc--- -3'
miRNA:   3'- -AGGUGGGGu-CUC-----UGGUGGCGGUucua -5'
29623 3' -58.7 NC_006151.1 + 37243 0.68 0.625084
Target:  5'- cCgGCCCCGGAGcccgcccgGCCcCCGCgCAGGAa -3'
miRNA:   3'- aGgUGGGGUCUC--------UGGuGGCG-GUUCUa -5'
29623 3' -58.7 NC_006151.1 + 37551 0.66 0.764441
Target:  5'- -gCGCCUCAucuacagcGGGGCCGCCGgCGAGGc -3'
miRNA:   3'- agGUGGGGU--------CUCUGGUGGCgGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 37880 0.7 0.554314
Target:  5'- cCCGCgCCggGGAGGCgACCGUCGAGGc -3'
miRNA:   3'- aGGUGgGG--UCUCUGgUGGCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 38058 0.66 0.773814
Target:  5'- gCCGCCCUcGGGcCCGCCuGCCucGAg -3'
miRNA:   3'- aGGUGGGGuCUCuGGUGG-CGGuuCUa -5'
29623 3' -58.7 NC_006151.1 + 38261 0.67 0.725872
Target:  5'- cUUCGCCCCGGccaacguGGCCGCggcccggcuCGCCGAGGc -3'
miRNA:   3'- -AGGUGGGGUCu------CUGGUG---------GCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 38575 0.7 0.544365
Target:  5'- gCCGCgcgCCCGGGGcCCGCCGCCccgGGGAc -3'
miRNA:   3'- aGGUG---GGGUCUCuGGUGGCGG---UUCUa -5'
29623 3' -58.7 NC_006151.1 + 39094 0.67 0.725872
Target:  5'- gCUGCCCCAcGAGgagcucugcGCCGagcCCGCCGAGGg -3'
miRNA:   3'- aGGUGGGGU-CUC---------UGGU---GGCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 39574 0.73 0.363466
Target:  5'- -gCACCCCGGGGccgagccgcugcGCCucuGCCGCCAGGAc -3'
miRNA:   3'- agGUGGGGUCUC------------UGG---UGGCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 40039 0.69 0.564315
Target:  5'- gCCGCCgCCGGGGG-CGCCGUgGAGAc -3'
miRNA:   3'- aGGUGG-GGUCUCUgGUGGCGgUUCUa -5'
29623 3' -58.7 NC_006151.1 + 44020 0.74 0.332584
Target:  5'- cCCGCCCCgcGGGGAgCCgGCCGUCGAGAa -3'
miRNA:   3'- aGGUGGGG--UCUCU-GG-UGGCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 45701 0.67 0.681988
Target:  5'- aCCAugggcugcacggucUCUCGGAgacggacGACCACCGCCGAGGc -3'
miRNA:   3'- aGGU--------------GGGGUCU-------CUGGUGGCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 45777 0.74 0.303672
Target:  5'- aCCGCCCCAGAagccccucGCCACCGCCGc--- -3'
miRNA:   3'- aGGUGGGGUCUc-------UGGUGGCGGUucua -5'
29623 3' -58.7 NC_006151.1 + 46157 0.7 0.544365
Target:  5'- cCCGCCCCAGAGuCC-CCGUCu---- -3'
miRNA:   3'- aGGUGGGGUCUCuGGuGGCGGuucua -5'
29623 3' -58.7 NC_006151.1 + 46539 0.7 0.534474
Target:  5'- gUCCGCggacgaCCAGAGGCCGgCGCCcAGGc -3'
miRNA:   3'- -AGGUGg-----GGUCUCUGGUgGCGGuUCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.