miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29623 3' -58.7 NC_006151.1 + 1077 0.71 0.476656
Target:  5'- cCCACCCCccucGACCACCG-CAGGAc -3'
miRNA:   3'- aGGUGGGGucu-CUGGUGGCgGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 1482 1.06 0.002093
Target:  5'- cUCCACCCCAGAGACCACCGCCAAGAUg -3'
miRNA:   3'- -AGGUGGGGUCUCUGGUGGCGGUUCUA- -5'
29623 3' -58.7 NC_006151.1 + 1692 0.68 0.6149
Target:  5'- cUCCGCCgCGGccGCCGCCGCCGc--- -3'
miRNA:   3'- -AGGUGGgGUCucUGGUGGCGGUucua -5'
29623 3' -58.7 NC_006151.1 + 1836 0.68 0.655637
Target:  5'- gCCGCCgggCCGaggggaccGAGGCCGCCGCCGcGGAc -3'
miRNA:   3'- aGGUGG---GGU--------CUCUGGUGGCGGU-UCUa -5'
29623 3' -58.7 NC_006151.1 + 4146 0.66 0.764441
Target:  5'- cCgGCCCCGGGGAUCGCguCGCgGAGc- -3'
miRNA:   3'- aGgUGGGGUCUCUGGUG--GCGgUUCua -5'
29623 3' -58.7 NC_006151.1 + 5779 0.68 0.665795
Target:  5'- gUCC-CCCCucgcgGGGGACCaucuccgcgggGCUGCCGAGGg -3'
miRNA:   3'- -AGGuGGGG-----UCUCUGG-----------UGGCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 6216 0.66 0.764441
Target:  5'- aUCCuCgCCGGAGgaGCCGCggCGCCGGGAg -3'
miRNA:   3'- -AGGuGgGGUCUC--UGGUG--GCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 6245 0.66 0.773814
Target:  5'- --aGCCCUGGcuGCCGCCGUCGGGGc -3'
miRNA:   3'- aggUGGGGUCucUGGUGGCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 6288 0.71 0.467316
Target:  5'- cUCgGCCgCGGcGGCgGCCGCCAGGAg -3'
miRNA:   3'- -AGgUGGgGUCuCUGgUGGCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 7264 0.66 0.773814
Target:  5'- cUCGCCCCAcGuGGCCGCCcucgGCCAauGGGg -3'
miRNA:   3'- aGGUGGGGU-CuCUGGUGG----CGGU--UCUa -5'
29623 3' -58.7 NC_006151.1 + 7909 0.71 0.486087
Target:  5'- cCCACCCCAcGAGACaCGCC-CCA-GAg -3'
miRNA:   3'- aGGUGGGGU-CUCUG-GUGGcGGUuCUa -5'
29623 3' -58.7 NC_006151.1 + 8973 0.7 0.521714
Target:  5'- -gCGCCCCGGGaagggucgggcgauGGCCGCCGCCAc--- -3'
miRNA:   3'- agGUGGGGUCU--------------CUGGUGGCGGUucua -5'
29623 3' -58.7 NC_006151.1 + 13389 0.72 0.430941
Target:  5'- cCCGCCuCCGGGGACgCGCCgGCCAauGGGg -3'
miRNA:   3'- aGGUGG-GGUCUCUG-GUGG-CGGU--UCUa -5'
29623 3' -58.7 NC_006151.1 + 13670 0.71 0.458071
Target:  5'- cCCGCCuCCGGGGACgCGCCgGCCAAu-- -3'
miRNA:   3'- aGGUGG-GGUCUCUG-GUGG-CGGUUcua -5'
29623 3' -58.7 NC_006151.1 + 13951 0.73 0.371491
Target:  5'- -gCGCCCCGGGGACgCGCCgGCCAugggGGAg -3'
miRNA:   3'- agGUGGGGUCUCUG-GUGG-CGGU----UCUa -5'
29623 3' -58.7 NC_006151.1 + 17069 0.67 0.686021
Target:  5'- gUCAgCCC--GGGCCGCCGCCGGGu- -3'
miRNA:   3'- aGGUgGGGucUCUGGUGGCGGUUCua -5'
29623 3' -58.7 NC_006151.1 + 21892 0.68 0.65462
Target:  5'- aCCGCCCCGGAG-CCACCaugagcaGCCc---- -3'
miRNA:   3'- aGGUGGGGUCUCuGGUGG-------CGGuucua -5'
29623 3' -58.7 NC_006151.1 + 22132 0.67 0.716007
Target:  5'- gUCCACCUgcggguCGGAGAUCAgCGCCAc--- -3'
miRNA:   3'- -AGGUGGG------GUCUCUGGUgGCGGUucua -5'
29623 3' -58.7 NC_006151.1 + 23513 0.67 0.716007
Target:  5'- cUCCACCgaCAGGGAgaCGgUGCCGAGGUa -3'
miRNA:   3'- -AGGUGGg-GUCUCUg-GUgGCGGUUCUA- -5'
29623 3' -58.7 NC_006151.1 + 23743 0.66 0.764441
Target:  5'- -gCACCUugCAGuGGCCGCCGUCAaAGAa -3'
miRNA:   3'- agGUGGG--GUCuCUGGUGGCGGU-UCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.