miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29623 3' -58.7 NC_006151.1 + 140194 0.67 0.686021
Target:  5'- --gACCCCAucGuGGCCACCGCgGGGGc -3'
miRNA:   3'- aggUGGGGU--CuCUGGUGGCGgUUCUa -5'
29623 3' -58.7 NC_006151.1 + 138613 0.66 0.745353
Target:  5'- gCCGCUCgGcGAGGaCGCCGCCGGGGg -3'
miRNA:   3'- aGGUGGGgU-CUCUgGUGGCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 137401 0.66 0.773814
Target:  5'- gCCugCCCgccGGGGggcgcccucGCCGCCGCCGcgGGGUc -3'
miRNA:   3'- aGGugGGG---UCUC---------UGGUGGCGGU--UCUA- -5'
29623 3' -58.7 NC_006151.1 + 136858 0.67 0.675926
Target:  5'- cUCgCGCgCCGcGuGACCGCCGUCGAGGa -3'
miRNA:   3'- -AG-GUGgGGU-CuCUGGUGGCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 134716 0.67 0.725872
Target:  5'- aCCGCCCCGcGuGGCCuuCGCgCGGGAc -3'
miRNA:   3'- aGGUGGGGU-CuCUGGugGCG-GUUCUa -5'
29623 3' -58.7 NC_006151.1 + 133008 0.68 0.645461
Target:  5'- uUCCGCCCgGGGGugCucUCGuCCAGGAc -3'
miRNA:   3'- -AGGUGGGgUCUCugGu-GGC-GGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 129207 0.67 0.696072
Target:  5'- aCCuCCCCGGGGGCCGCCaGCa----- -3'
miRNA:   3'- aGGuGGGGUCUCUGGUGG-CGguucua -5'
29623 3' -58.7 NC_006151.1 + 125014 0.66 0.783063
Target:  5'- cUCCgcgagGCCUCGGAGGCCAUcgaCGCCAu--- -3'
miRNA:   3'- -AGG-----UGGGGUCUCUGGUG---GCGGUucua -5'
29623 3' -58.7 NC_006151.1 + 118016 0.73 0.387067
Target:  5'- cUCACCCgcgacgaUGGAGGCCGCgGCCAAGAc -3'
miRNA:   3'- aGGUGGG-------GUCUCUGGUGgCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 117911 0.66 0.745353
Target:  5'- cUUCACCCCGccgccGGACCcguCCGCCcGGAg -3'
miRNA:   3'- -AGGUGGGGUc----UCUGGu--GGCGGuUCUa -5'
29623 3' -58.7 NC_006151.1 + 114122 0.71 0.495607
Target:  5'- gCUGCCCCAcGuGcGCCGCCGCCGAGc- -3'
miRNA:   3'- aGGUGGGGU-CuC-UGGUGGCGGUUCua -5'
29623 3' -58.7 NC_006151.1 + 111393 0.66 0.745353
Target:  5'- gCCGCCgCCGGc-ACCcCCGCCGGGGc -3'
miRNA:   3'- aGGUGG-GGUCucUGGuGGCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 109972 0.69 0.603713
Target:  5'- cCCACCCgGGAGGacuugacCCGcgagcCCGCCGAGGa -3'
miRNA:   3'- aGGUGGGgUCUCU-------GGU-----GGCGGUUCUa -5'
29623 3' -58.7 NC_006151.1 + 109783 0.66 0.735657
Target:  5'- aCCACCCCcGAG-CUcCCGCC-GGAg -3'
miRNA:   3'- aGGUGGGGuCUCuGGuGGCGGuUCUa -5'
29623 3' -58.7 NC_006151.1 + 109735 0.66 0.783063
Target:  5'- cUCGCCgCUGGAGcggaugccgugGCCGCCGCCGuuGGAg -3'
miRNA:   3'- aGGUGG-GGUCUC-----------UGGUGGCGGU--UCUa -5'
29623 3' -58.7 NC_006151.1 + 109378 0.69 0.604729
Target:  5'- uUCCGCCCCcgccgcACCACCGCCGGc-- -3'
miRNA:   3'- -AGGUGGGGucuc--UGGUGGCGGUUcua -5'
29623 3' -58.7 NC_006151.1 + 109283 0.67 0.706071
Target:  5'- gCCGCCCCcuccGAGAucgagcggcCCGCCGCCucGGc -3'
miRNA:   3'- aGGUGGGGu---CUCU---------GGUGGCGGuuCUa -5'
29623 3' -58.7 NC_006151.1 + 109226 0.75 0.289957
Target:  5'- cCCGCCCCGGcgcAGACCcaGCCGCCGcGGUc -3'
miRNA:   3'- aGGUGGGGUC---UCUGG--UGGCGGUuCUA- -5'
29623 3' -58.7 NC_006151.1 + 109091 0.74 0.325171
Target:  5'- gUCgGCCCCGGAGGCCcagugaggcgaGCCGCCGGc-- -3'
miRNA:   3'- -AGgUGGGGUCUCUGG-----------UGGCGGUUcua -5'
29623 3' -58.7 NC_006151.1 + 108703 0.68 0.645461
Target:  5'- cUCCuggagcCCCCGGGagugguGGCCAgCGCCGAGGa -3'
miRNA:   3'- -AGGu-----GGGGUCU------CUGGUgGCGGUUCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.