Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 29629 | 3' | -43.1 | NC_006151.1 | + | 20122 | 0.66 | 1 |
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Target: 5'- gGCgacGGGGCUGgggggcgggCGCCGCggggGCg -3' miRNA: 3'- -CGau-UUUCGAUaaaaua---GCGGCGa---CG- -5' |
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| 29629 | 3' | -43.1 | NC_006151.1 | + | 112598 | 0.66 | 1 |
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Target: 5'- -gUGGAGGCcgccgcggCGCCGCUGg -3' miRNA: 3'- cgAUUUUCGauaaaauaGCGGCGACg -5' |
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| 29629 | 3' | -43.1 | NC_006151.1 | + | 107582 | 0.66 | 1 |
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Target: 5'- aGCUGAcucccgccgccAAGCUGgccccgccggCGCCGCcGCc -3' miRNA: 3'- -CGAUU-----------UUCGAUaaaaua----GCGGCGaCG- -5' |
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| 29629 | 3' | -43.1 | NC_006151.1 | + | 104867 | 0.66 | 1 |
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Target: 5'- gGCgacGGAGCgcgccacgCGCCuGCUGCg -3' miRNA: 3'- -CGau-UUUCGauaaaauaGCGG-CGACG- -5' |
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| 29629 | 3' | -43.1 | NC_006151.1 | + | 47521 | 0.66 | 1 |
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Target: 5'- cGCUAAuuGCaGUaacg-CGCgGCUGCc -3' miRNA: 3'- -CGAUUuuCGaUAaaauaGCGgCGACG- -5' |
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| 29629 | 3' | -43.1 | NC_006151.1 | + | 31004 | 0.66 | 1 |
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Target: 5'- aGgaGGGAGgaAggggGUCGCCGCcGCg -3' miRNA: 3'- -CgaUUUUCgaUaaaaUAGCGGCGaCG- -5' |
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| 29629 | 3' | -43.1 | NC_006151.1 | + | 5880 | 0.66 | 1 |
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Target: 5'- cGCcGGGGGCcccggccUCuGCCGCUGCg -3' miRNA: 3'- -CGaUUUUCGauaaaauAG-CGGCGACG- -5' |
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| 29629 | 3' | -43.1 | NC_006151.1 | + | 85929 | 0.67 | 1 |
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Target: 5'- --gAGGGGCUGggcc--UGCUGCUGCa -3' miRNA: 3'- cgaUUUUCGAUaaaauaGCGGCGACG- -5' |
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| 29629 | 3' | -43.1 | NC_006151.1 | + | 106362 | 0.66 | 1 |
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Target: 5'- cGCUGGAcgcgGGCgcgcgcc-CGCCGCgGCg -3' miRNA: 3'- -CGAUUU----UCGauaaaauaGCGGCGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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