miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29629 5' -57.4 NC_006151.1 + 126029 0.66 0.853991
Target:  5'- gGGCcuCGGCGaCgUGGGCGCCGccgUCg -3'
miRNA:   3'- aCCGc-GCCGC-GgAUCUGUGGCaa-AGa -5'
29629 5' -57.4 NC_006151.1 + 75223 0.66 0.853991
Target:  5'- gGGCGCGcGUcgGCCacgUAGGCGCCGa---- -3'
miRNA:   3'- aCCGCGC-CG--CGG---AUCUGUGGCaaaga -5'
29629 5' -57.4 NC_006151.1 + 105040 0.66 0.853991
Target:  5'- cGGCGCugcugcucGGCGCCgucgaggAGGCGCCcgagCUg -3'
miRNA:   3'- aCCGCG--------CCGCGGa------UCUGUGGcaaaGA- -5'
29629 5' -57.4 NC_006151.1 + 20461 0.66 0.852426
Target:  5'- gGGgGUGGCGCCggucccccggggGGGCGCgGgggUCg -3'
miRNA:   3'- aCCgCGCCGCGGa-----------UCUGUGgCaa-AGa -5'
29629 5' -57.4 NC_006151.1 + 103742 0.66 0.851641
Target:  5'- cUGGCGCGGCagugcgaggagcgcGCCgcGGCGCUGcgcgagUCg -3'
miRNA:   3'- -ACCGCGCCG--------------CGGauCUGUGGCaa----AGa -5'
29629 5' -57.4 NC_006151.1 + 102212 0.66 0.849273
Target:  5'- cGGCGCccgcacccacggggaGGCGCCgu-GCGCCGUc--- -3'
miRNA:   3'- aCCGCG---------------CCGCGGaucUGUGGCAaaga -5'
29629 5' -57.4 NC_006151.1 + 129127 0.66 0.846088
Target:  5'- aGGCGCgcugGGCGCCaaAGAgCGCCGgcgCa -3'
miRNA:   3'- aCCGCG----CCGCGGa-UCU-GUGGCaaaGa -5'
29629 5' -57.4 NC_006151.1 + 58348 0.66 0.846088
Target:  5'- aGGCGCGcGCGaagCUGGucCGCCGcgUCg -3'
miRNA:   3'- aCCGCGC-CGCg--GAUCu-GUGGCaaAGa -5'
29629 5' -57.4 NC_006151.1 + 100481 0.66 0.846088
Target:  5'- aGGCGCuGgGCCUgcAGGCGcCCGUgUUCc -3'
miRNA:   3'- aCCGCGcCgCGGA--UCUGU-GGCA-AAGa -5'
29629 5' -57.4 NC_006151.1 + 135621 0.66 0.846088
Target:  5'- cGGcCGCGGCGCCc--GCACCa----- -3'
miRNA:   3'- aCC-GCGCCGCGGaucUGUGGcaaaga -5'
29629 5' -57.4 NC_006151.1 + 101289 0.66 0.846088
Target:  5'- gGGCgcggGCGGCGCCgcgcuGCACUGcgUCUu -3'
miRNA:   3'- aCCG----CGCCGCGGauc--UGUGGCaaAGA- -5'
29629 5' -57.4 NC_006151.1 + 84623 0.66 0.846088
Target:  5'- -cGCGCGGcCGCCgcGGCGCUGg---- -3'
miRNA:   3'- acCGCGCC-GCGGauCUGUGGCaaaga -5'
29629 5' -57.4 NC_006151.1 + 103309 0.66 0.846088
Target:  5'- -cGCGCGGCGC---GACGCCGag-CUg -3'
miRNA:   3'- acCGCGCCGCGgauCUGUGGCaaaGA- -5'
29629 5' -57.4 NC_006151.1 + 100811 0.66 0.845287
Target:  5'- gGGCGaCGGCgaggcggGCCccGACGCCGUgccgCUc -3'
miRNA:   3'- aCCGC-GCCG-------CGGauCUGUGGCAaa--GA- -5'
29629 5' -57.4 NC_006151.1 + 83625 0.66 0.837992
Target:  5'- cGGCGUcgcgaaGGCgGCCUGGugcuGCGCCGUg--- -3'
miRNA:   3'- aCCGCG------CCG-CGGAUC----UGUGGCAaaga -5'
29629 5' -57.4 NC_006151.1 + 77681 0.66 0.837992
Target:  5'- cGGCGuCGGCGCuCUcgcuGACGCuCGUg--- -3'
miRNA:   3'- aCCGC-GCCGCG-GAu---CUGUG-GCAaaga -5'
29629 5' -57.4 NC_006151.1 + 50027 0.66 0.837992
Target:  5'- -cGCGCGGCGCCcccGGGCGCgGc---- -3'
miRNA:   3'- acCGCGCCGCGGa--UCUGUGgCaaaga -5'
29629 5' -57.4 NC_006151.1 + 113107 0.66 0.837992
Target:  5'- gGGgGCGGgGCCgcggacgcGGACGCCGc---- -3'
miRNA:   3'- aCCgCGCCgCGGa-------UCUGUGGCaaaga -5'
29629 5' -57.4 NC_006151.1 + 33303 0.66 0.837992
Target:  5'- gGGCGCGcGCGCgUGGG-ACCGg---- -3'
miRNA:   3'- aCCGCGC-CGCGgAUCUgUGGCaaaga -5'
29629 5' -57.4 NC_006151.1 + 18311 0.66 0.837992
Target:  5'- gGaGCGgGGCGCCUccucgGGGCGCaCGUa--- -3'
miRNA:   3'- aC-CGCgCCGCGGA-----UCUGUG-GCAaaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.