miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29632 3' -63.1 NC_006151.1 + 122687 0.66 0.58771
Target:  5'- cGCgCGGCGGccGugGAGCUCGCGcUCu- -3'
miRNA:   3'- -UG-GCCGCCc-CugCUCGGGCGCuAGuu -5'
29632 3' -63.1 NC_006151.1 + 114536 0.66 0.58771
Target:  5'- gACCcGCGGacGACGuGCCCGCcGUCAGc -3'
miRNA:   3'- -UGGcCGCCc-CUGCuCGGGCGcUAGUU- -5'
29632 3' -63.1 NC_006151.1 + 58222 0.66 0.58771
Target:  5'- aGCC-GCGcGGGACGAGCaCGCGcgCc- -3'
miRNA:   3'- -UGGcCGC-CCCUGCUCGgGCGCuaGuu -5'
29632 3' -63.1 NC_006151.1 + 2482 0.66 0.58771
Target:  5'- gGCCGcGCGGugcccgaaGGCGGcGCCCGCG-UCAAa -3'
miRNA:   3'- -UGGC-CGCCc-------CUGCU-CGGGCGCuAGUU- -5'
29632 3' -63.1 NC_006151.1 + 31961 0.66 0.58771
Target:  5'- cGCCGGggaCGcGGGACGuGCCCGCc----- -3'
miRNA:   3'- -UGGCC---GC-CCCUGCuCGGGCGcuaguu -5'
29632 3' -63.1 NC_006151.1 + 76810 0.66 0.586732
Target:  5'- cCCGGCGaGGGCGggcgcguaguggcGGCCCGCG-UCc- -3'
miRNA:   3'- uGGCCGCcCCUGC-------------UCGGGCGCuAGuu -5'
29632 3' -63.1 NC_006151.1 + 72864 0.66 0.577944
Target:  5'- gUCGGCGaGGcGGCGGcGCCCGUG-UCGg -3'
miRNA:   3'- uGGCCGC-CC-CUGCU-CGGGCGCuAGUu -5'
29632 3' -63.1 NC_006151.1 + 84814 0.66 0.577944
Target:  5'- gACC-GCGGccgcGGACGGGgCCGCGAggugCAGa -3'
miRNA:   3'- -UGGcCGCC----CCUGCUCgGGCGCUa---GUU- -5'
29632 3' -63.1 NC_006151.1 + 142293 0.66 0.577944
Target:  5'- gACCGGCcGGGACGAGa--GCGAg--- -3'
miRNA:   3'- -UGGCCGcCCCUGCUCgggCGCUaguu -5'
29632 3' -63.1 NC_006151.1 + 38303 0.66 0.577944
Target:  5'- cGCCGcGCGGcc-CGGGCCCGCGGa--- -3'
miRNA:   3'- -UGGC-CGCCccuGCUCGGGCGCUaguu -5'
29632 3' -63.1 NC_006151.1 + 61046 0.66 0.577944
Target:  5'- aGCCGGCGGuaGGGCcGGCCCGUcAUg-- -3'
miRNA:   3'- -UGGCCGCC--CCUGcUCGGGCGcUAguu -5'
29632 3' -63.1 NC_006151.1 + 78695 0.66 0.576969
Target:  5'- cGCCGGcCGGGGccucgucgccgcgACGGcGCCCGUGGg--- -3'
miRNA:   3'- -UGGCC-GCCCC-------------UGCU-CGGGCGCUaguu -5'
29632 3' -63.1 NC_006151.1 + 102883 0.66 0.576969
Target:  5'- cGCC-GCGGuGGCGGGCCUGCGccgccucGUCGAc -3'
miRNA:   3'- -UGGcCGCCcCUGCUCGGGCGC-------UAGUU- -5'
29632 3' -63.1 NC_006151.1 + 122973 0.66 0.572101
Target:  5'- cGCCGGCgacGGGGGCGucggcgacgaagacgGGCCCgGCGcgCc- -3'
miRNA:   3'- -UGGCCG---CCCCUGC---------------UCGGG-CGCuaGuu -5'
29632 3' -63.1 NC_006151.1 + 67862 0.66 0.568214
Target:  5'- aGCCGGCGccgaGGuGGCGcgcgcgccAGCCCGCGGggCAc -3'
miRNA:   3'- -UGGCCGC----CC-CUGC--------UCGGGCGCUa-GUu -5'
29632 3' -63.1 NC_006151.1 + 7687 0.66 0.568214
Target:  5'- aGCCGGuCGGaGaGACGAGCggaaCCGCcGUCGGa -3'
miRNA:   3'- -UGGCC-GCC-C-CUGCUCG----GGCGcUAGUU- -5'
29632 3' -63.1 NC_006151.1 + 130911 0.66 0.568214
Target:  5'- cGCCGucguCGGuGGcCGGGCCCGCGGgggCGGg -3'
miRNA:   3'- -UGGCc---GCC-CCuGCUCGGGCGCUa--GUU- -5'
29632 3' -63.1 NC_006151.1 + 84395 0.66 0.568214
Target:  5'- gACgGGCGGGGAgCGGGUgggCGCGGUgAu -3'
miRNA:   3'- -UGgCCGCCCCU-GCUCGg--GCGCUAgUu -5'
29632 3' -63.1 NC_006151.1 + 71634 0.66 0.568214
Target:  5'- cGCCGGgGGGGACG-GUCgGgGGgccgUCGAa -3'
miRNA:   3'- -UGGCCgCCCCUGCuCGGgCgCU----AGUU- -5'
29632 3' -63.1 NC_006151.1 + 52385 0.66 0.567243
Target:  5'- gGCCcGCGGGGGCGGcgggcgccgccgcGCCCGagaaGUCAAa -3'
miRNA:   3'- -UGGcCGCCCCUGCU-------------CGGGCgc--UAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.