miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29632 5' -58.3 NC_006151.1 + 58051 0.75 0.314164
Target:  5'- aGCCcaGcgCGcaguaguaguCCUCGUCCGCGCCCUCg -3'
miRNA:   3'- -UGGa-CuaGCu---------GGAGUAGGCGCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 109946 0.74 0.359136
Target:  5'- cCCUGggCGGCCUCggCCGCGUCUg- -3'
miRNA:   3'- uGGACuaGCUGGAGuaGGCGCGGGag -5'
29632 5' -58.3 NC_006151.1 + 137634 0.74 0.359136
Target:  5'- cGCCUc--CGcCCUCGUCCGCGCCCcCg -3'
miRNA:   3'- -UGGAcuaGCuGGAGUAGGCGCGGGaG- -5'
29632 5' -58.3 NC_006151.1 + 76124 0.72 0.434594
Target:  5'- cAUCUGGUCGGCCgug-CCGCGCUCg- -3'
miRNA:   3'- -UGGACUAGCUGGaguaGGCGCGGGag -5'
29632 5' -58.3 NC_006151.1 + 117948 0.72 0.443532
Target:  5'- gACCgaGAcUCGACCccgUCcgCCGCGCCUUCu -3'
miRNA:   3'- -UGGa-CU-AGCUGG---AGuaGGCGCGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 71340 0.72 0.443532
Target:  5'- cGCC-GA-CGACCUCG-CCGUGgCCCUCg -3'
miRNA:   3'- -UGGaCUaGCUGGAGUaGGCGC-GGGAG- -5'
29632 5' -58.3 NC_006151.1 + 97390 0.72 0.480281
Target:  5'- ----cGUCGGCCUCGUCCGUGCCgUg -3'
miRNA:   3'- uggacUAGCUGGAGUAGGCGCGGgAg -5'
29632 5' -58.3 NC_006151.1 + 135272 0.71 0.508791
Target:  5'- gGCCUGcUCGACgaggUCGUCCGUGUCCg- -3'
miRNA:   3'- -UGGACuAGCUGg---AGUAGGCGCGGGag -5'
29632 5' -58.3 NC_006151.1 + 109870 0.71 0.53799
Target:  5'- gACCUGA-CGGCgCUCGUCCcuccCGCCCa- -3'
miRNA:   3'- -UGGACUaGCUG-GAGUAGGc---GCGGGag -5'
29632 5' -58.3 NC_006151.1 + 50343 0.7 0.547853
Target:  5'- cGCCUGGccgCGGCCUCccgCCGCGUCUcCg -3'
miRNA:   3'- -UGGACUa--GCUGGAGua-GGCGCGGGaG- -5'
29632 5' -58.3 NC_006151.1 + 62440 0.7 0.547853
Target:  5'- cGCCUGGUCcgcGCCUgCAUcgcccaCCGCGCCCg- -3'
miRNA:   3'- -UGGACUAGc--UGGA-GUA------GGCGCGGGag -5'
29632 5' -58.3 NC_006151.1 + 124996 0.7 0.577756
Target:  5'- cACCUGggCGACUgcgUCcUCCGCGaggCCUCg -3'
miRNA:   3'- -UGGACuaGCUGG---AGuAGGCGCg--GGAG- -5'
29632 5' -58.3 NC_006151.1 + 4817 0.7 0.577756
Target:  5'- gGCCUGGcggacgUCGuCCUCGUCCcagaGC-CCCUCg -3'
miRNA:   3'- -UGGACU------AGCuGGAGUAGG----CGcGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 48966 0.7 0.577756
Target:  5'- cGCCUGGaCGcGCCUCA-CgGCGCCCg- -3'
miRNA:   3'- -UGGACUaGC-UGGAGUaGgCGCGGGag -5'
29632 5' -58.3 NC_006151.1 + 123931 0.7 0.587808
Target:  5'- gGCCgccUCGGCCUCG-CCGaCGCCCg- -3'
miRNA:   3'- -UGGacuAGCUGGAGUaGGC-GCGGGag -5'
29632 5' -58.3 NC_006151.1 + 65878 0.7 0.587808
Target:  5'- aGCCauugGGUCagcagGGCCUCGUCCGCcUCCUCc -3'
miRNA:   3'- -UGGa---CUAG-----CUGGAGUAGGCGcGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 102359 0.69 0.618127
Target:  5'- gGCCggcGA-CGACg-CGUCCGCGCCCg- -3'
miRNA:   3'- -UGGa--CUaGCUGgaGUAGGCGCGGGag -5'
29632 5' -58.3 NC_006151.1 + 100630 0.69 0.618127
Target:  5'- gACCUGGUCagcGCCgcgCugcgCCGCGCCgUCg -3'
miRNA:   3'- -UGGACUAGc--UGGa--Gua--GGCGCGGgAG- -5'
29632 5' -58.3 NC_006151.1 + 57244 0.69 0.628264
Target:  5'- ---cGcgCGGCCUCggcGUCCGCgcgGCCCUCg -3'
miRNA:   3'- uggaCuaGCUGGAG---UAGGCG---CGGGAG- -5'
29632 5' -58.3 NC_006151.1 + 58504 0.69 0.648538
Target:  5'- uGCCcgcgcgcgGGcCGGCCUCGUCCuCGUCCUCc -3'
miRNA:   3'- -UGGa-------CUaGCUGGAGUAGGcGCGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.