Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29632 | 5' | -58.3 | NC_006151.1 | + | 75540 | 0.69 | 0.648538 |
Target: 5'- cACCUGcgUGGCCUgGUacaCGCGCUuCUCg -3' miRNA: 3'- -UGGACuaGCUGGAgUAg--GCGCGG-GAG- -5' |
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29632 | 5' | -58.3 | NC_006151.1 | + | 1664 | 0.68 | 0.668761 |
Target: 5'- gACCgGGaCGAuCCUCcgCCGCcgaGCCCUCc -3' miRNA: 3'- -UGGaCUaGCU-GGAGuaGGCG---CGGGAG- -5' |
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29632 | 5' | -58.3 | NC_006151.1 | + | 103244 | 0.68 | 0.678833 |
Target: 5'- gACCUGcugCGGCa-CAUCCGCGCCa-- -3' miRNA: 3'- -UGGACua-GCUGgaGUAGGCGCGGgag -5' |
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29632 | 5' | -58.3 | NC_006151.1 | + | 38237 | 0.68 | 0.678833 |
Target: 5'- cGCCUG---GACCUacgCCGCGgCCCUCu -3' miRNA: 3'- -UGGACuagCUGGAguaGGCGC-GGGAG- -5' |
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29632 | 5' | -58.3 | NC_006151.1 | + | 78778 | 0.68 | 0.678833 |
Target: 5'- uCCUGAccgccuUCGGCgaCUCGcCCGCGgCCCUCc -3' miRNA: 3'- uGGACU------AGCUG--GAGUaGGCGC-GGGAG- -5' |
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29632 | 5' | -58.3 | NC_006151.1 | + | 61860 | 0.68 | 0.688867 |
Target: 5'- cCCUGAugcUCGGCg-CGUCUGCGCCUg- -3' miRNA: 3'- uGGACU---AGCUGgaGUAGGCGCGGGag -5' |
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29632 | 5' | -58.3 | NC_006151.1 | + | 139134 | 0.68 | 0.692869 |
Target: 5'- cGCCccgugCGcCCUCGUcuucccgcuguacgcCCGCGCCCUCg -3' miRNA: 3'- -UGGacua-GCuGGAGUA---------------GGCGCGGGAG- -5' |
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29632 | 5' | -58.3 | NC_006151.1 | + | 49645 | 0.68 | 0.698855 |
Target: 5'- gGCCguggaggaGGUCGAgcCCUCcgggCCGCGCCCg- -3' miRNA: 3'- -UGGa-------CUAGCU--GGAGua--GGCGCGGGag -5' |
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29632 | 5' | -58.3 | NC_006151.1 | + | 114230 | 0.68 | 0.702836 |
Target: 5'- uCCUGGccUCGGuggccgcgcgggaccCCUCGgagCGCGCCCUCg -3' miRNA: 3'- uGGACU--AGCU---------------GGAGUag-GCGCGGGAG- -5' |
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29632 | 5' | -58.3 | NC_006151.1 | + | 126168 | 0.68 | 0.702836 |
Target: 5'- gGCCUGGUCGcggccuuccuggccuACCggcaCAUCuCGCGCCUg- -3' miRNA: 3'- -UGGACUAGC---------------UGGa---GUAG-GCGCGGGag -5' |
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29632 | 5' | -58.3 | NC_006151.1 | + | 89867 | 0.68 | 0.708788 |
Target: 5'- ---cGGUCG-CCUCGUagaCGCGCCgCUCg -3' miRNA: 3'- uggaCUAGCuGGAGUAg--GCGCGG-GAG- -5' |
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29632 | 5' | -58.3 | NC_006151.1 | + | 99736 | 0.68 | 0.708788 |
Target: 5'- gGCgCUcGUCGACCUCGccgccgCCGCGgaCCUCg -3' miRNA: 3'- -UG-GAcUAGCUGGAGUa-----GGCGCg-GGAG- -5' |
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29632 | 5' | -58.3 | NC_006151.1 | + | 83916 | 0.67 | 0.718658 |
Target: 5'- cGCCUGcgccgCGACC-CGUCCGCGUacggcgagagUCUCu -3' miRNA: 3'- -UGGACua---GCUGGaGUAGGCGCG----------GGAG- -5' |
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29632 | 5' | -58.3 | NC_006151.1 | + | 37029 | 0.67 | 0.728455 |
Target: 5'- cGCCgcgcGGcgcUCGGCCUCcUCCuCGUCCUCg -3' miRNA: 3'- -UGGa---CU---AGCUGGAGuAGGcGCGGGAG- -5' |
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29632 | 5' | -58.3 | NC_006151.1 | + | 105466 | 0.67 | 0.728455 |
Target: 5'- cCCUGggCGACUUCuUCCGCgacgccgguGCCgUCg -3' miRNA: 3'- uGGACuaGCUGGAGuAGGCG---------CGGgAG- -5' |
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29632 | 5' | -58.3 | NC_006151.1 | + | 37976 | 0.67 | 0.728455 |
Target: 5'- cGCCUGcGUCcuGGCCUgCcgCgGCGUCCUCg -3' miRNA: 3'- -UGGAC-UAG--CUGGA-GuaGgCGCGGGAG- -5' |
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29632 | 5' | -58.3 | NC_006151.1 | + | 122792 | 0.67 | 0.738169 |
Target: 5'- -gCUGcgCGGCCUCGcCCGacgaGCgCCUCg -3' miRNA: 3'- ugGACuaGCUGGAGUaGGCg---CG-GGAG- -5' |
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29632 | 5' | -58.3 | NC_006151.1 | + | 38821 | 0.67 | 0.747794 |
Target: 5'- cGCCcGAcggCGGCUUCcgCCGCGUCC-Cg -3' miRNA: 3'- -UGGaCUa--GCUGGAGuaGGCGCGGGaG- -5' |
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29632 | 5' | -58.3 | NC_006151.1 | + | 12079 | 0.67 | 0.748751 |
Target: 5'- gGCCUcccCGACCUCucucacccgcccucCCGCGCUCUCu -3' miRNA: 3'- -UGGAcuaGCUGGAGua------------GGCGCGGGAG- -5' |
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29632 | 5' | -58.3 | NC_006151.1 | + | 73276 | 0.67 | 0.751616 |
Target: 5'- uGCCggcGUUGACCgugcggcgcagguagUCGUCCGCGUCCg- -3' miRNA: 3'- -UGGac-UAGCUGG---------------AGUAGGCGCGGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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